Variant report

Variant	rs2715616
Chromosome Location	chr3:133628065-133628066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1525887	0.81[ASN][1000 genomes]
rs1525888	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1917778	0.86[ASN][1000 genomes]
rs1949882	0.86[ASN][1000 genomes]
rs2030821	0.81[ASN][1000 genomes]
rs2140920	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2140921	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2370638	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2692679	0.81[ASN][1000 genomes]
rs2692686	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2692687	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2692688	0.82[AMR][1000 genomes]
rs2692689	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2692693	0.81[ASN][1000 genomes]
rs2715612	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2715617	0.81[ASN][1000 genomes]
rs2715635	0.86[ASN][1000 genomes]
rs7610245	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133616400-133635200	Weak transcription	Pancreas	Pancrea
2	chr3:133628000-133628200	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 2	blood
3	chr3:133628000-133628200	Enhancers	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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