Variant report
| Variant | rs2692686 |
|---|---|
| Chromosome Location | chr3:133629112-133629113 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:133627734..133631905-chr3:133632384..133636087,4 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1106735 | 0.88[CHB][hapmap] |
| rs1525887 | 0.81[ASN][1000 genomes] |
| rs1525888 | 0.82[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1917778 | 0.86[ASN][1000 genomes] |
| rs1917779 | 0.88[CHB][hapmap];0.80[GIH][hapmap] |
| rs1949882 | 0.82[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs2030821 | 0.81[ASN][1000 genomes] |
| rs2140920 | 0.82[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2140921 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2370638 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2692677 | 0.84[YRI][hapmap] |
| rs2692679 | 0.81[ASN][1000 genomes] |
| rs2692682 | 0.88[CHB][hapmap];0.86[GIH][hapmap] |
| rs2692687 | 0.82[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2692688 | 0.82[AMR][1000 genomes] |
| rs2692689 | 0.82[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2692693 | 0.81[ASN][1000 genomes] |
| rs2715612 | 0.82[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2715616 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2715617 | 0.81[ASN][1000 genomes] |
| rs2715620 | 0.88[CHB][hapmap] |
| rs2715630 | 0.88[CHB][hapmap];0.80[GIH][hapmap] |
| rs2715635 | 0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs7610245 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933605 | chr3:133425907-133680641 | Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:133616400-133635200 | Weak transcription | Pancreas | Pancrea |
