Variant report
| Variant | rs2692688 |
|---|---|
| Chromosome Location | chr3:133627156-133627157 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:133619752..133622303-chr3:133626683..133628323,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1106735 | 0.81[ASN][1000 genomes] |
| rs1525887 | 0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1525888 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1917779 | 0.81[ASN][1000 genomes] |
| rs2030821 | 0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2140920 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2140921 | 0.82[AMR][1000 genomes] |
| rs2370638 | 0.82[AMR][1000 genomes] |
| rs2692679 | 0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2692682 | 0.89[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2692686 | 0.82[AMR][1000 genomes] |
| rs2692687 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2692689 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2692693 | 0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2715612 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2715616 | 0.82[AMR][1000 genomes] |
| rs2715617 | 0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2715619 | 0.89[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2715620 | 0.89[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs57405758 | 0.81[ASN][1000 genomes] |
| rs7610245 | 0.82[AMR][1000 genomes] |
| rs7641134 | 0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933605 | chr3:133425907-133680641 | Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:133616400-133635200 | Weak transcription | Pancreas | Pancrea |
