Variant report

Variant	rs2722660
Chromosome Location	chr19:44905779-44905780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:44905370-44905883	A549	lung:	n/a	n/a
2	JUND	chr19:44905711-44905938	K562	blood:	n/a	n/a
3	YY1	chr19:44905389-44906090	SK-N-SH	brain:	n/a	n/a
4	CEBPB	chr19:44905603-44905974	K562	blood:	n/a	n/a
5	POLR2A	chr19:44905604-44905915	A549	lung:	n/a	n/a
6	MAX	chr19:44905699-44905972	H1-hESC	embryonic stem cell:	n/a	n/a
7	TBL1XR1	chr19:44905682-44905947	K562	blood:	n/a	n/a
8	E2F6	chr19:44905624-44905925	K562	blood:	n/a	chr19:44905781-44905790 chr19:44905709-44905724
9	POLR2A	chr19:44905481-44906029	PANC-1	pancreas:	n/a	n/a
10	KAP1	chr19:44905444-44906216	U2OS	brain:	n/a	n/a
11	EP300	chr19:44905737-44906010	K562	blood:	n/a	n/a
12	ETS1	chr19:44905282-44906068	A549	lung:	n/a	chr19:44905803-44905816
13	GABPA	chr19:44905599-44906104	A549	lung:	n/a	chr19:44905780-44905789 chr19:44905780-44905791 chr19:44905777-44905791 chr19:44905823-44905832 chr19:44905780-44905794 chr19:44905782-44905791
14	YY1	chr19:44905508-44905966	H1-hESC	embryonic stem cell:	n/a	n/a
15	POLR2A	chr19:44905756-44905967	SK-N-SH	brain:	n/a	n/a
16	KAP1	chr19:44905402-44905979	HEK293	kidney:	n/a	n/a
17	POLR2A	chr19:44905582-44905923	A549	lung:	n/a	n/a
18	RCOR1	chr19:44905571-44905899	K562	blood:	n/a	n/a
19	POLR2A	chr19:44905599-44905954	HUVEC	blood vessel:	n/a	n/a
20	SP1	chr19:44905329-44906143	A549	lung:	n/a	chr19:44905384-44905398 chr19:44906127-44906139 chr19:44906128-44906137 chr19:44906128-44906142 chr19:44906129-44906138 chr19:44906128-44906137 chr19:44906127-44906139
21	CREB1	chr19:44905603-44905906	A549	lung:	n/a	n/a
22	GABPA	chr19:44905522-44906089	MCF-7	breast:	n/a	chr19:44905780-44905789 chr19:44905780-44905791 chr19:44905777-44905791 chr19:44905823-44905832 chr19:44905780-44905794 chr19:44905782-44905791
23	HCFC1	chr19:44905593-44906020	K562	blood:	n/a	n/a
24	GABPA	chr19:44905184-44906230	A549	lung:	n/a	chr19:44905780-44905789 chr19:44905780-44905791 chr19:44906129-44906138 chr19:44905777-44905791 chr19:44905823-44905832 chr19:44905780-44905794 chr19:44905782-44905791
25	POLR2A	chr19:44905453-44906093	MCF10A-Er-Src	breast:	n/a	n/a
26	GABPA	chr19:44905570-44905922	K562	blood:	n/a	chr19:44905780-44905789 chr19:44905780-44905791 chr19:44905777-44905791 chr19:44905823-44905832 chr19:44905780-44905794 chr19:44905782-44905791
27	MAX	chr19:44905568-44905924	K562	blood:	n/a	n/a
28	ETS1	chr19:44905400-44906193	A549	lung:	n/a	chr19:44905803-44905816 chr19:44906129-44906140
29	POLR2A	chr19:44905656-44905925	MCF-7	breast:	n/a	n/a
30	YY1	chr19:44905701-44905848	K562	blood:	n/a	n/a
31	ELF1	chr19:44905588-44906164	MCF-7	breast:	n/a	n/a
32	MAZ	chr19:44905066-44906085	IMR90	lung:	n/a	n/a
33	MYC	chr19:44905600-44906016	MCF10A-Er-Src	breast:	n/a	n/a
34	E2F6	chr19:44905405-44905986	A549	lung:	n/a	chr19:44905781-44905790 chr19:44905709-44905724
35	NRF1	chr19:44905046-44906211	SK-N-SH	brain:	n/a	chr19:44905780-44905789 chr19:44905780-44905791 chr19:44905780-44905791 chr19:44906129-44906138 chr19:44905777-44905791 chr19:44905823-44905832 chr19:44905780-44905794 chr19:44905782-44905791
36	YY1	chr19:44905528-44906034	HepG2	liver:	n/a	n/a
37	POLR2A	chr19:44905380-44905873	MCF-7	breast:	n/a	n/a
38	MAX	chr19:44905656-44905893	K562	blood:	n/a	n/a
39	POLR2A	chr19:44905209-44906062	HUVEC	blood vessel:	n/a	n/a
40	SPI1	chr19:44905385-44906028	HL-60	blood:	n/a	chr19:44905618-44905631
41	FOSL2	chr19:44905666-44906026	A549	lung:	n/a	n/a
42	YY1	chr19:44905490-44905974	SK-N-SH_RA	brain:	n/a	n/a
43	MAX	chr19:44905218-44906132	A549	lung:	n/a	n/a
44	NRF1	chr19:44905614-44905970	K562	blood:	n/a	chr19:44905780-44905789 chr19:44905780-44905791 chr19:44905780-44905791 chr19:44905777-44905791 chr19:44905823-44905832 chr19:44905780-44905794 chr19:44905782-44905791
45	REST	chr19:44905247-44906030	A549	lung:	n/a	chr19:44905769-44905783 chr19:44905822-44905835
46	NRF1	chr19:44905625-44905944	HepG2	liver:	n/a	chr19:44905780-44905789 chr19:44905780-44905791 chr19:44905780-44905791 chr19:44905777-44905791 chr19:44905823-44905832 chr19:44905780-44905794 chr19:44905782-44905791
47	POLR2A	chr19:44905464-44905907	MCF-7	breast:	n/a	n/a
48	MYC	chr19:44905611-44905962	K562	blood:	n/a	n/a
49	TAF1	chr19:44905655-44905966	PFSK-1	brain:	n/a	n/a
50	YY1	chr19:44905591-44905994	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ZNF285	TF binding region
ENSG00000267173	TF binding region

Extended variants
information (count: 90 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10425040	1.00[ASN][1000 genomes]
rs11881044	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12151055	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12151056	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12151064	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12971572	0.85[AMR][1000 genomes]
rs12973197	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12973212	0.96[ASN][1000 genomes]
rs1816464	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1816465	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1816466	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1816467	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2164114	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2437013	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2437014	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2437022	0.95[ASN][1000 genomes]
rs2466414	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2466415	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2571121	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2571122	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2571123	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2571124	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2571125	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2571126	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2571127	0.98[ASN][1000 genomes]
rs2571128	0.98[ASN][1000 genomes]
rs2571129	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2571130	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2571131	0.97[ASN][1000 genomes]
rs2571132	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2571134	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2571136	0.98[ASN][1000 genomes]
rs2571141	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2571143	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2571144	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2571145	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2571147	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2571148	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2571149	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2571150	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2571151	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2571152	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2571153	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2571155	0.93[ASN][1000 genomes]
rs2722646	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2722647	0.87[ASN][1000 genomes]
rs2722650	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2722652	0.92[ASN][1000 genomes]
rs2722653	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2722658	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2722659	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2722661	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2722662	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2722664	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2722665	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2722667	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2722669	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28696788	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35650732	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4268861	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs8102685	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs892593	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579855	chr19:44852134-44930348	Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv515911	chr19:44852134-44935019	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv912112	chr19:44853707-45011727	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv912113	chr19:44858776-44928885	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv912114	chr19:44858776-45002563	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1062330	chr19:44863939-44938277	Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1061350	chr19:44869075-45035469	Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv960889	chr19:44877441-44913480	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2763206	chr19:44885379-44941728	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv960852	chr19:44890187-44921203	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv3318557	chr19:44892181-44938875	Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv3318558	chr19:44892356-44938748	Active TSS ZNF genes & repeats Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv15098	chr19:44892380-44913200	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv9734	chr19:44892761-44940023	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv2756827	chr19:44894102-44947444	Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	esv2758764	chr19:44894102-44947444	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv1065783	chr19:44894164-44930803	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv1055278	chr19:44896386-44907795	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv1063780	chr19:44896386-44930803	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv1059267	chr19:44896386-44938277	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv1055870	chr19:44896386-44938779	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
22	esv2421963	chr19:44896398-44938791	Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv442465	chr19:44896398-44938791	ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
24	nsv1058295	chr19:44896888-44938779	Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
25	nsv1065703	chr19:44898759-44938779	Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
26	esv2754816	chr19:44899473-44930803	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
27	nsv1065424	chr19:44899546-44938779	ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
28	nsv817849	chr19:44903015-44935019	ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs2722660	ZNF285	cis	Nerve Tibial	GTEx
rs2722660	ZNF285	cis	Esophagus Mucosa	GTEx
rs2722660	ZNF285	cis	Artery Tibial	GTEx
rs2722660	ZNF285	cis	Artery Aorta	GTEx
rs2722660	ZNF285	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44904600-44906200	Active TSS	Fetal Brain Female	brain
2	chr19:44904800-44906200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:44904800-44906200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr19:44904800-44906200	Active TSS	Brain Germinal Matrix	brain
5	chr19:44904800-44906200	Active TSS	Colon Smooth Muscle	Colon
6	chr19:44904800-44906400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr19:44904800-44906400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr19:44904800-44906400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr19:44904800-44906400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr19:44904800-44906800	Active TSS	HSMMtube	muscle
11	chr19:44905000-44905800	Active TSS	H9 Cell Line	embryonic stem cell
12	chr19:44905000-44905800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
13	chr19:44905000-44905800	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr19:44905000-44906000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr19:44905000-44906000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr19:44905000-44906000	Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr19:44905000-44906000	Active TSS	HUES64 Cell Line	embryonic stem cell
18	chr19:44905000-44906000	Active TSS	iPS-20b Cell Line	embryonic stem cell
19	chr19:44905000-44906000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
20	chr19:44905000-44906000	Active TSS	Muscle Satellite Cultured Cells	--
21	chr19:44905000-44906000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr19:44905000-44906000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr19:44905000-44906000	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr19:44905000-44906000	Active TSS	A549	lung
25	chr19:44905000-44906000	Active TSS	NH-A	brain
26	chr19:44905000-44906200	Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr19:44905000-44906200	Active TSS	H1 Cell Line	embryonic stem cell
28	chr19:44905000-44906200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr19:44905000-44906200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr19:44905000-44906200	Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr19:44905000-44906200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr19:44905000-44906200	Active TSS	Primary hematopoietic stem cells	blood
33	chr19:44905000-44906200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr19:44905000-44906200	Active TSS	Brain Inferior Temporal Lobe	brain
35	chr19:44905000-44906200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr19:44905000-44906200	Active TSS	Fetal Intestine Large	intestine
37	chr19:44905000-44906200	Active TSS	Fetal Intestine Small	intestine
38	chr19:44905000-44906200	Active TSS	Fetal Kidney	kidney
39	chr19:44905000-44906200	Active TSS	Fetal Stomach	stomach
40	chr19:44905000-44906200	Active TSS	Right Ventricle	heart
41	chr19:44905000-44906200	Active TSS	NHEK	skin
42	chr19:44905000-44906400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr19:44905000-44906400	Active TSS	HUES6 Cell Line	embryonic stem cell
44	chr19:44905000-44906400	Active TSS	Brain Angular Gyrus	brain
45	chr19:44905000-44906400	Active TSS	Brain Anterior Caudate	brain
46	chr19:44905000-44906400	Active TSS	Brain Substantia Nigra	brain
47	chr19:44905000-44906400	Active TSS	Rectal Mucosa Donor 29	rectum
48	chr19:44905000-44906400	Active TSS	Stomach Smooth Muscle	stomach
49	chr19:44905000-44906400	Active TSS	NHDF-Ad	bronchial
50	chr19:44905000-44906800	Active TSS	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links