Variant report

Variant	rs2731894
Chromosome Location	chr5:36529325-36529326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2562583	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2731890	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2731891	0.89[AFR][1000 genomes]
rs2731893	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2731895	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881666	chr5:36498183-36537369	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36523000-36530200	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:36523000-36535400	Weak transcription	Psoas Muscle	Psoas
3	chr5:36523000-36537800	Weak transcription	Right Ventricle	heart
4	chr5:36525200-36537200	Weak transcription	Brain Anterior Caudate	brain
5	chr5:36526200-36531800	Enhancers	Placenta	Placenta
6	chr5:36528000-36529800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr5:36528600-36529400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr5:36528600-36529400	Enhancers	HMEC	breast
9	chr5:36528600-36531600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:36528800-36529400	Enhancers	Adipose Nuclei	Adipose
11	chr5:36528800-36529600	Enhancers	Placenta Amnion	Placenta Amnion
12	chr5:36528800-36529800	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr5:36528800-36530200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr5:36529000-36530600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:36529200-36529600	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr5:36529200-36530200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:36529200-36535600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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