Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1124245	0.83[ASN][1000 genomes]
rs11745414	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11748292	0.82[EUR][1000 genomes]
rs11749280	0.82[EUR][1000 genomes]
rs12374568	0.82[EUR][1000 genomes]
rs12652219	0.82[EUR][1000 genomes]
rs13166425	0.91[EUR][1000 genomes]
rs13168912	0.82[EUR][1000 genomes]
rs17359426	0.80[EUR][1000 genomes]
rs2562583	0.84[AFR][1000 genomes]
rs2731890	0.91[AFR][1000 genomes]
rs2731892	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2731893	0.91[AFR][1000 genomes]
rs2731894	0.89[AFR][1000 genomes]
rs2731895	0.86[AFR][1000 genomes]
rs2731897	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34374307	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34487779	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34546912	0.82[EUR][1000 genomes]
rs35371171	0.82[EUR][1000 genomes]
rs35659611	0.90[EUR][1000 genomes]
rs35706272	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55959609	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881666	chr5:36498183-36537369	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36523000-36530200	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:36523000-36535400	Weak transcription	Psoas Muscle	Psoas
3	chr5:36523000-36537800	Weak transcription	Right Ventricle	heart
4	chr5:36523200-36528600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:36524000-36529000	Weak transcription	Esophagus	oesophagus
6	chr5:36524600-36528800	Weak transcription	Adipose Nuclei	Adipose
7	chr5:36525200-36537200	Weak transcription	Brain Anterior Caudate	brain
8	chr5:36525400-36528600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:36526000-36527400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:36526000-36527400	Enhancers	HMEC	breast
11	chr5:36526200-36527200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:36526200-36527200	Enhancers	NHEK	skin
13	chr5:36526200-36527400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:36526200-36531800	Enhancers	Placenta	Placenta
15	chr5:36526600-36527000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:36526600-36527000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr5:36526800-36527400	Active TSS	K562	blood

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