Variant report

Variant	rs35706272
Chromosome Location	chr5:36530357-36530358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1124245	0.83[ASN][1000 genomes]
rs11745414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2731891	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2731892	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2731897	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34374307	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34487779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881666	chr5:36498183-36537369	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36523000-36535400	Weak transcription	Psoas Muscle	Psoas
2	chr5:36523000-36537800	Weak transcription	Right Ventricle	heart
3	chr5:36525200-36537200	Weak transcription	Brain Anterior Caudate	brain
4	chr5:36526200-36531800	Enhancers	Placenta	Placenta
5	chr5:36528600-36531600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:36529000-36530600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:36529200-36535600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:36529600-36531400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr5:36530000-36531200	Enhancers	Placenta Amnion	Placenta Amnion
10	chr5:36530200-36530400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr5:36530200-36530800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr5:36530200-36530800	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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