Variant report

Variant	rs2731897
Chromosome Location	chr5:36537369-36537370
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11745414	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2731891	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2731892	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2731895	0.81[AFR][1000 genomes]
rs34374307	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34487779	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35706272	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881666	chr5:36498183-36537369	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2731897	SLC45A2	cis	cerebellum	SCAN
rs2731897	PRLR	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36523000-36537800	Weak transcription	Right Ventricle	heart
2	chr5:36533400-36537600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:36534400-36539600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:36535400-36537600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr5:36535400-36538400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:36535800-36537800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:36535800-36537800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:36535800-36538200	Enhancers	Brain Cingulate Gyrus	brain
9	chr5:36536000-36538800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:36536200-36537400	Weak transcription	Left Ventricle	heart
11	chr5:36536200-36538200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:36536400-36538000	Enhancers	Brain Substantia Nigra	brain
13	chr5:36536400-36538200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:36537200-36537600	Enhancers	Esophagus	oesophagus
15	chr5:36537200-36538400	Enhancers	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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