Variant report

Variant	rs2731895
Chromosome Location	chr5:36535867-36535868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36531471..36533045-chr5:36535708..36538491,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2562583	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2731890	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2731891	0.86[AFR][1000 genomes]
rs2731893	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2731894	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2731897	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881666	chr5:36498183-36537369	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36523000-36537800	Weak transcription	Right Ventricle	heart
2	chr5:36525200-36537200	Weak transcription	Brain Anterior Caudate	brain
3	chr5:36533400-36537600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:36534400-36539600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr5:36534600-36536200	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr5:36534600-36536400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr5:36535000-36536200	Enhancers	Placenta	Placenta
8	chr5:36535400-36536000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:36535400-36536200	Enhancers	Left Ventricle	heart
10	chr5:36535400-36536200	Enhancers	Psoas Muscle	Psoas
11	chr5:36535400-36536200	Enhancers	NHEK	skin
12	chr5:36535400-36536400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:36535400-36536400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr5:36535400-36537600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr5:36535400-36538400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr5:36535600-36536000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:36535600-36536200	Enhancers	Adipose Nuclei	Adipose
18	chr5:36535600-36536200	Enhancers	Esophagus	oesophagus
19	chr5:36535600-36536200	Enhancers	Ovary	ovary
20	chr5:36535600-36536400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr5:36535600-36536400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr5:36535600-36537000	Enhancers	Brain Hippocampus Middle	brain
23	chr5:36535800-36536000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:36535800-36537800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr5:36535800-36537800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:36535800-36538200	Enhancers	Brain Cingulate Gyrus	brain

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