Variant report

Variant	rs35371171
Chromosome Location	chr5:36507627-36507628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:36414161..36415558-chr5:36507119..36508035,4	MCF-7	breast:
2	chr5:36415574..36416438-chr5:36507363..36507957,2	MCF-7	breast:
3	chr5:36414583..36415587-chr5:36506983..36508090,7	K562	blood:
4	chr5:36500289..36503797-chr5:36504246..36507630,3	K562	blood:
5	chr5:36507187..36508089-chr5:36692700..36694128,7	MCF-7	breast:
6	chr5:36412717..36413437-chr5:36507212..36508126,2	K562	blood:
7	chr5:36079366..36080125-chr5:36507043..36508002,2	K562	blood:
8	chr5:36415574..36416124-chr5:36507070..36507980,2	MCF-7	breast:
9	chr5:36265104..36265888-chr5:36507183..36507807,2	K562	blood:

No data

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10805615	1.00[ASN][1000 genomes]
rs10805616	1.00[ASN][1000 genomes]
rs10941298	0.90[EUR][1000 genomes]
rs11745030	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11746647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11748292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11749280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12374568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12652219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13160898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13166425	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13168912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13185087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17359426	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2731888	0.86[ASN][1000 genomes]
rs2731891	0.82[EUR][1000 genomes]
rs34546912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34788729	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35659611	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36067088	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4358550	1.00[ASN][1000 genomes]
rs4484459	0.95[ASN][1000 genomes]
rs55959609	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8180422	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881666	chr5:36498183-36537369	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36504400-36508400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:36505400-36507800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:36505400-36508400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:36507200-36508000	Enhancers	Hela-S3	cervix
5	chr5:36507200-36508600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:36507600-36507800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr5:36507600-36508000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:36507600-36508000	Enhancers	Right Ventricle	heart
9	chr5:36507600-36508200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:36507600-36508200	Enhancers	NHEK	skin

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