Variant report

Variant	rs2731888
Chromosome Location	chr5:36523915-36523916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10805615	0.86[ASN][1000 genomes]
rs10805616	0.86[ASN][1000 genomes]
rs1124245	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11746647	0.81[ASN][1000 genomes]
rs11748292	0.86[ASN][1000 genomes]
rs11749280	0.86[ASN][1000 genomes]
rs12374568	0.86[ASN][1000 genomes]
rs12652219	0.86[ASN][1000 genomes]
rs13160898	0.81[ASN][1000 genomes]
rs13166425	1.00[ASN][1000 genomes]
rs13168912	0.86[ASN][1000 genomes]
rs13185087	0.81[ASN][1000 genomes]
rs17359426	0.86[ASN][1000 genomes]
rs2468532	0.91[TSI][hapmap]
rs35371171	0.86[ASN][1000 genomes]
rs35659611	1.00[ASN][1000 genomes]
rs4358550	0.86[ASN][1000 genomes]
rs4484459	0.81[ASN][1000 genomes]
rs55959609	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881666	chr5:36498183-36537369	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36521200-36524800	Enhancers	Right Atrium	heart
2	chr5:36521400-36524200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr5:36521400-36525200	Enhancers	Left Ventricle	heart
4	chr5:36521600-36524400	Weak transcription	Brain Anterior Caudate	brain
5	chr5:36521800-36524600	Enhancers	Adipose Nuclei	Adipose
6	chr5:36522200-36524000	Enhancers	Fetal Heart	heart
7	chr5:36522800-36525400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr5:36523000-36524000	Weak transcription	Brain Hippocampus Middle	brain
9	chr5:36523000-36526200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:36523000-36526200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:36523000-36526200	Weak transcription	NHEK	skin
12	chr5:36523000-36530200	Weak transcription	Fetal Muscle Leg	muscle
13	chr5:36523000-36535400	Weak transcription	Psoas Muscle	Psoas
14	chr5:36523000-36537800	Weak transcription	Right Ventricle	heart
15	chr5:36523200-36528600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr5:36523600-36524400	Enhancers	Fetal Brain Female	brain
17	chr5:36523600-36524800	Enhancers	Fetal Brain Male	brain
18	chr5:36523600-36525600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr5:36523800-36524000	Enhancers	Esophagus	oesophagus
20	chr5:36523800-36524200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr5:36523800-36525000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr5:36523800-36525200	Enhancers	Brain Cingulate Gyrus	brain

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