Variant report

Variant	rs13166425
Chromosome Location	chr5:36523738-36523739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10805615	0.86[ASN][1000 genomes]
rs10805616	0.86[ASN][1000 genomes]
rs10941298	0.81[EUR][1000 genomes]
rs1124245	0.81[ASN][1000 genomes]
rs11746647	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11748292	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11749280	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12374568	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12652219	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13160898	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13168912	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13185087	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17359426	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2731888	1.00[ASN][1000 genomes]
rs2731891	0.91[EUR][1000 genomes]
rs34546912	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34788729	0.83[EUR][1000 genomes]
rs35371171	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35659611	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36067088	0.85[EUR][1000 genomes]
rs4358550	0.86[ASN][1000 genomes]
rs4484459	0.81[ASN][1000 genomes]
rs55959609	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881666	chr5:36498183-36537369	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36521200-36524800	Enhancers	Right Atrium	heart
2	chr5:36521400-36524200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr5:36521400-36525200	Enhancers	Left Ventricle	heart
4	chr5:36521600-36524400	Weak transcription	Brain Anterior Caudate	brain
5	chr5:36521800-36524600	Enhancers	Adipose Nuclei	Adipose
6	chr5:36522000-36523800	Enhancers	Pancreas	Pancrea
7	chr5:36522200-36524000	Enhancers	Fetal Heart	heart
8	chr5:36522800-36523800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:36522800-36523800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr5:36522800-36525400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr5:36523000-36523800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:36523000-36523800	Weak transcription	Esophagus	oesophagus
13	chr5:36523000-36524000	Weak transcription	Brain Hippocampus Middle	brain
14	chr5:36523000-36526200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:36523000-36526200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:36523000-36526200	Weak transcription	NHEK	skin
17	chr5:36523000-36530200	Weak transcription	Fetal Muscle Leg	muscle
18	chr5:36523000-36535400	Weak transcription	Psoas Muscle	Psoas
19	chr5:36523000-36537800	Weak transcription	Right Ventricle	heart
20	chr5:36523200-36528600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr5:36523600-36524400	Enhancers	Fetal Brain Female	brain
22	chr5:36523600-36524800	Enhancers	Fetal Brain Male	brain
23	chr5:36523600-36525600	Enhancers	Cortex derived primary cultured neurospheres	brain

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