Variant report

Variant	rs2732497
Chromosome Location	chr4:101966982-101966983
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10009613	0.91[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs10019685	0.89[ASN][1000 genomes]
rs1042094	0.90[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs1405686	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2141145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2178006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2251238	0.83[JPT][hapmap]
rs2695203	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2695204	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2695205	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs2732496	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2732519	0.83[CHB][hapmap]
rs2851060	0.83[JPT][hapmap]
rs2851061	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs2851062	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2851063	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3804350	0.83[JPT][hapmap]
rs3804351	0.89[ASN][1000 genomes]
rs3804353	0.94[ASN][1000 genomes]
rs60223015	0.89[ASN][1000 genomes]
rs6833324	0.83[JPT][hapmap]
rs72927395	0.83[ASN][1000 genomes]
rs9884444	0.93[ASN][1000 genomes]
rs997926	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101936200-101967800	Weak transcription	Fetal Kidney	kidney
2	chr4:101941200-101971000	Weak transcription	Psoas Muscle	Psoas
3	chr4:101941200-102000200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr4:101941200-102035600	Weak transcription	Fetal Intestine Small	intestine
5	chr4:101942000-101970200	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:101942400-101971400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:101942600-102003200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:101942600-102024400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:101943200-101967400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:101943200-101967400	Weak transcription	Spleen	Spleen
11	chr4:101943400-101967200	Weak transcription	Fetal Brain Male	brain
12	chr4:101943800-102023400	Weak transcription	Fetal Lung	lung
13	chr4:101944400-101968400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:101944400-101981200	Weak transcription	Pancreas	Pancrea
15	chr4:101944400-102000200	Weak transcription	Fetal Stomach	stomach
16	chr4:101945600-101970800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr4:101945800-101970800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr4:101947800-102012600	Weak transcription	Fetal Muscle Leg	muscle
19	chr4:101950200-101967000	Weak transcription	Stomach Mucosa	stomach
20	chr4:101950200-101971400	Weak transcription	Brain Angular Gyrus	brain
21	chr4:101950400-101971400	Weak transcription	Brain Anterior Caudate	brain
22	chr4:101951800-101967200	Weak transcription	Right Ventricle	heart
23	chr4:101953600-101970200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr4:101953600-101972000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr4:101953600-101983800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr4:101953600-101992200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:101953600-102015200	Weak transcription	Fetal Intestine Large	intestine
28	chr4:101954200-101972000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr4:101958400-101981200	Weak transcription	Aorta	Aorta
30	chr4:101959000-102023000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr4:101959400-101967400	Weak transcription	Hela-S3	cervix
32	chr4:101959400-101981400	Weak transcription	HMEC	breast
33	chr4:101959600-101971400	Weak transcription	Left Ventricle	heart
34	chr4:101959600-101984400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr4:101959600-101986800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr4:101959600-101990600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr4:101959600-102003000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr4:101959800-101969200	Weak transcription	Lung	lung
39	chr4:101960800-101971400	Weak transcription	Primary hematopoietic stem cells	blood
40	chr4:101960800-101995000	Weak transcription	HSMM	muscle
41	chr4:101960800-102004000	Weak transcription	Fetal Muscle Trunk	muscle
42	chr4:101960800-102004200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr4:101960800-102019800	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr4:101961000-101980800	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr4:101961000-101982600	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr4:101961000-102024600	Weak transcription	NHEK	skin
47	chr4:101961200-102024600	Weak transcription	Small Intestine	intestine
48	chr4:101961400-101981000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr4:101961600-101995200	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr4:101962000-101978400	Weak transcription	Osteobl	bone

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