Variant report

Variant	rs2851062
Chromosome Location	chr4:101968611-101968612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10009613	0.90[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs10019685	0.83[ASN][1000 genomes]
rs1042094	0.90[CHB][hapmap];0.95[CHD][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs1405686	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.96[ASN][1000 genomes]
rs2141145	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2178006	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2251238	0.82[CHD][hapmap];0.83[JPT][hapmap]
rs2695189	0.84[ASN][1000 genomes]
rs2695190	0.84[ASN][1000 genomes]
rs2695196	0.83[ASN][1000 genomes]
rs2695203	1.00[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs2695205	0.82[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs2732496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2732497	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2732519	0.82[CHB][hapmap]
rs2851060	0.90[CHD][hapmap];0.83[JPT][hapmap]
rs2851061	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs3804350	0.85[CHD][hapmap];0.83[JPT][hapmap]
rs3804351	0.83[ASN][1000 genomes]
rs3804353	0.87[ASN][1000 genomes]
rs60223015	0.83[ASN][1000 genomes]
rs6833324	0.82[JPT][hapmap]
rs9884444	0.86[ASN][1000 genomes]
rs997926	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2851062	C4orf37	cis	cerebellum	SCAN

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101941200-101971000	Weak transcription	Psoas Muscle	Psoas
2	chr4:101941200-102000200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr4:101941200-102035600	Weak transcription	Fetal Intestine Small	intestine
4	chr4:101942000-101970200	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:101942400-101971400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:101942600-102003200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:101942600-102024400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:101943800-102023400	Weak transcription	Fetal Lung	lung
9	chr4:101944400-101981200	Weak transcription	Pancreas	Pancrea
10	chr4:101944400-102000200	Weak transcription	Fetal Stomach	stomach
11	chr4:101945600-101970800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr4:101945800-101970800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr4:101947800-102012600	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:101950200-101971400	Weak transcription	Brain Angular Gyrus	brain
15	chr4:101950400-101971400	Weak transcription	Brain Anterior Caudate	brain
16	chr4:101953600-101970200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr4:101953600-101972000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr4:101953600-101983800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr4:101953600-101992200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:101953600-102015200	Weak transcription	Fetal Intestine Large	intestine
21	chr4:101954200-101972000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr4:101958400-101981200	Weak transcription	Aorta	Aorta
23	chr4:101959000-102023000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr4:101959400-101981400	Weak transcription	HMEC	breast
25	chr4:101959600-101971400	Weak transcription	Left Ventricle	heart
26	chr4:101959600-101984400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr4:101959600-101986800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr4:101959600-101990600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr4:101959600-102003000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr4:101959800-101969200	Weak transcription	Lung	lung
31	chr4:101960800-101971400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr4:101960800-101995000	Weak transcription	HSMM	muscle
33	chr4:101960800-102004000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr4:101960800-102004200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr4:101960800-102019800	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr4:101961000-101980800	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr4:101961000-101982600	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr4:101961000-102024600	Weak transcription	NHEK	skin
39	chr4:101961200-102024600	Weak transcription	Small Intestine	intestine
40	chr4:101961400-101981000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr4:101961600-101995200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr4:101962000-101978400	Weak transcription	Osteobl	bone
43	chr4:101962200-101970800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr4:101962200-101981400	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr4:101962200-102000200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr4:101962400-101970400	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr4:101964000-101973000	Weak transcription	Brain Germinal Matrix	brain
48	chr4:101964200-101987800	Weak transcription	HSMMtube	muscle
49	chr4:101966200-101971400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr4:101966400-101971400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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