Variant report

Variant	rs2178006
Chromosome Location	chr4:101970512-101970513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10009613	0.90[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs10019685	0.86[ASN][1000 genomes]
rs1042094	0.90[CHB][hapmap];0.83[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs1405686	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1880942	0.82[MEX][hapmap]
rs2141145	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2251238	0.83[JPT][hapmap]
rs2695189	0.81[ASN][1000 genomes]
rs2695190	0.81[ASN][1000 genomes]
rs2695203	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2695204	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2695205	0.82[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs2732496	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2732497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2732519	0.82[CHB][hapmap]
rs2851060	0.80[CHD][hapmap];0.83[JPT][hapmap]
rs2851061	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2851062	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2851063	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3804350	0.83[JPT][hapmap]
rs3804351	0.86[ASN][1000 genomes]
rs3804353	0.91[ASN][1000 genomes]
rs60223015	0.86[ASN][1000 genomes]
rs6833324	0.82[JPT][hapmap]
rs72927395	0.80[ASN][1000 genomes]
rs9884444	0.89[ASN][1000 genomes]
rs997926	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101941200-101971000	Weak transcription	Psoas Muscle	Psoas
2	chr4:101941200-102000200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr4:101941200-102035600	Weak transcription	Fetal Intestine Small	intestine
4	chr4:101942400-101971400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:101942600-102003200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:101942600-102024400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:101943800-102023400	Weak transcription	Fetal Lung	lung
8	chr4:101944400-101981200	Weak transcription	Pancreas	Pancrea
9	chr4:101944400-102000200	Weak transcription	Fetal Stomach	stomach
10	chr4:101945600-101970800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr4:101945800-101970800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr4:101947800-102012600	Weak transcription	Fetal Muscle Leg	muscle
13	chr4:101950200-101971400	Weak transcription	Brain Angular Gyrus	brain
14	chr4:101950400-101971400	Weak transcription	Brain Anterior Caudate	brain
15	chr4:101953600-101972000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr4:101953600-101983800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr4:101953600-101992200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:101953600-102015200	Weak transcription	Fetal Intestine Large	intestine
19	chr4:101954200-101972000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr4:101958400-101981200	Weak transcription	Aorta	Aorta
21	chr4:101959000-102023000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr4:101959400-101981400	Weak transcription	HMEC	breast
23	chr4:101959600-101971400	Weak transcription	Left Ventricle	heart
24	chr4:101959600-101984400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr4:101959600-101986800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr4:101959600-101990600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr4:101959600-102003000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr4:101960800-101971400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr4:101960800-101995000	Weak transcription	HSMM	muscle
30	chr4:101960800-102004000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr4:101960800-102004200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr4:101960800-102019800	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr4:101961000-101980800	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr4:101961000-101982600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr4:101961000-102024600	Weak transcription	NHEK	skin
36	chr4:101961200-102024600	Weak transcription	Small Intestine	intestine
37	chr4:101961400-101981000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr4:101961600-101995200	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr4:101962000-101978400	Weak transcription	Osteobl	bone
40	chr4:101962200-101970800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr4:101962200-101981400	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr4:101962200-102000200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr4:101964000-101973000	Weak transcription	Brain Germinal Matrix	brain
44	chr4:101964200-101987800	Weak transcription	HSMMtube	muscle
45	chr4:101966200-101971400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr4:101966400-101971400	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr4:101966400-101971800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr4:101966400-101971800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr4:101966600-101970600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr4:101966600-101975800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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