Variant report

Variant	rs2732578
Chromosome Location	chr11:35131751-35131752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35123473..35125204-chr11:35129634..35132229,2	MCF-7	breast:
2	chr11:35129946..35132170-chr11:35133262..35135380,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1425802	0.80[EUR][1000 genomes]
rs2039619	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2042679	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2250466	0.95[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2553810	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2553812	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2553813	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2553817	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2732568	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2732572	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2732573	0.95[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2732579	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2785174	0.85[CEU][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2785175	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2785176	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2785178	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2785180	0.86[EUR][1000 genomes]
rs353561	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs353563	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs353565	0.85[CEU][hapmap];0.88[GIH][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs353566	0.85[CEU][hapmap]
rs353571	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs353573	0.85[CEU][hapmap];0.91[MEX][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs353574	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs353577	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs353579	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs353580	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs398734	0.85[CEU][hapmap];0.91[MEX][hapmap]
rs4756191	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56299057	0.85[EUR][1000 genomes]
rs61881594	0.85[EUR][1000 genomes]
rs626524	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs866292	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv540999	chr11:35021936-35185471	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv541000	chr11:35053717-35185471	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv541001	chr11:35053717-35224624	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	esv2757437	chr11:35067482-35238578	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv2752912	chr11:35074167-35238578	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	nsv508623	chr11:35094933-35203363	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
10	nsv541002	chr11:35101282-35224624	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv541003	chr11:35122694-35261451	Genic enhancers Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
12	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35122400-35132600	Weak transcription	Right Ventricle	heart
2	chr11:35123000-35132200	Weak transcription	Lung	lung
3	chr11:35123000-35132600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:35123000-35132600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:35126400-35133600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr11:35126800-35134000	Enhancers	Primary B cells from peripheral blood	blood
7	chr11:35127000-35132800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:35127000-35133800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr11:35127000-35134600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:35127200-35132200	Weak transcription	Adipose Nuclei	Adipose
11	chr11:35127400-35132200	Weak transcription	HSMMtube	muscle
12	chr11:35127400-35132200	Weak transcription	NHDF-Ad	bronchial
13	chr11:35127400-35132400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:35127400-35132400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:35127400-35132400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr11:35127400-35132800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr11:35127600-35132200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:35127600-35132200	Weak transcription	Left Ventricle	heart
19	chr11:35127600-35132200	Weak transcription	Right Atrium	heart
20	chr11:35127600-35132400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:35127600-35133600	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr11:35127600-35134000	Enhancers	GM12878-XiMat	blood
23	chr11:35127800-35132600	Weak transcription	Fetal Muscle Leg	muscle
24	chr11:35128000-35132200	Weak transcription	Esophagus	oesophagus
25	chr11:35128000-35132400	Weak transcription	Colon Smooth Muscle	Colon
26	chr11:35128400-35132600	Weak transcription	Pancreas	Pancrea
27	chr11:35128400-35135800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr11:35128600-35133600	Enhancers	Primary B cells from cord blood	blood
29	chr11:35128600-35134000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr11:35129000-35132000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr11:35129000-35132200	Weak transcription	Duodenum Mucosa	Duodenum
32	chr11:35129000-35132400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr11:35129000-35132600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr11:35129200-35132200	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr11:35129400-35132000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr11:35129400-35132600	Weak transcription	Dnd41	blood
37	chr11:35129600-35132400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:35129800-35132000	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr11:35129800-35132400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr11:35130000-35132000	Weak transcription	Primary hematopoietic stem cells	blood
41	chr11:35130200-35131800	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr11:35130200-35132200	Weak transcription	Primary T cells from cord blood	blood
43	chr11:35130800-35132600	Weak transcription	Fetal Thymus	thymus
44	chr11:35130800-35133600	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr11:35131000-35133000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:35131000-35133400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr11:35131000-35133400	Enhancers	HMEC	breast
48	chr11:35131000-35139400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:35131200-35132200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr11:35131200-35132200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links