Variant report

Variant	rs2733249
Chromosome Location	chr15:45945756-45945757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12708404	1.00[ASN][1000 genomes]
rs12907319	1.00[ASN][1000 genomes]
rs12910629	1.00[ASN][1000 genomes]
rs12915009	1.00[ASN][1000 genomes]
rs35394591	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35707605	1.00[ASN][1000 genomes]
rs6493163	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7496542	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv904190	chr15:45892672-45960897	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	27 gene(s)	inside rSNPs	n/a
3	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45933800-45951200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:45934200-45961600	Weak transcription	Fetal Kidney	kidney
3	chr15:45934800-45945800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr15:45938400-45950400	Weak transcription	Brain Hippocampus Middle	brain
5	chr15:45938600-45951000	Weak transcription	Primary B cells from cord blood	blood
6	chr15:45938600-45952600	Weak transcription	Adipose Nuclei	Adipose
7	chr15:45938800-45949400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr15:45938800-45954200	Weak transcription	Aorta	Aorta
9	chr15:45941400-45950600	Weak transcription	Primary T cells from cord blood	blood
10	chr15:45941600-45949400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr15:45941600-45951800	Weak transcription	Thymus	Thymus
12	chr15:45941600-45952400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr15:45941600-45952600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr15:45941600-45954000	Weak transcription	Hela-S3	cervix
15	chr15:45941600-45966800	Weak transcription	NHLF	lung
16	chr15:45942200-45950800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr15:45942200-45951600	Weak transcription	NHEK	skin
18	chr15:45942600-45945800	Weak transcription	Right Atrium	heart
19	chr15:45942600-45946000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr15:45942600-45950600	Weak transcription	HMEC	breast
21	chr15:45942800-45946000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:45942800-45949200	Weak transcription	Liver	Liver
23	chr15:45942800-45950800	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr15:45942800-45951000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr15:45942800-45951800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr15:45942800-45952800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:45943200-45949400	Weak transcription	Fetal Stomach	stomach
28	chr15:45943600-45946000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:45943600-45948200	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr15:45943800-45949000	Weak transcription	Fetal Intestine Large	intestine
31	chr15:45943800-45950400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr15:45943800-45950600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr15:45943800-45956600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr15:45944000-45950600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:45944200-45948400	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr15:45944400-45948600	Weak transcription	Fetal Intestine Small	intestine
37	chr15:45945000-45946200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr15:45945000-45947600	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr15:45945200-45945800	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr15:45945200-45946200	Enhancers	Lung	lung
41	chr15:45945200-45946400	Enhancers	Small Intestine	intestine
42	chr15:45945200-45947800	Enhancers	Colon Smooth Muscle	Colon
43	chr15:45945400-45945800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr15:45945400-45946200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr15:45945400-45946200	Enhancers	Colonic Mucosa	Colon
46	chr15:45945400-45946200	Enhancers	Duodenum Mucosa	Duodenum
47	chr15:45945400-45946200	Enhancers	Gastric	stomach
48	chr15:45945400-45946200	Enhancers	Right Ventricle	heart
49	chr15:45945400-45946200	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr15:45945400-45947000	Enhancers	Esophagus	oesophagus

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