Variant report

Variant	rs35707605
Chromosome Location	chr15:45931807-45931808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:45931689..45934379-chr15:45936432..45937938,2	MCF-7	breast:
2	chr15:45931549..45933106-chr15:45935286..45937099,2	K562	blood:
3	chr15:45931592..45934146-chr15:45938709..45942844,4	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12708404	1.00[ASN][1000 genomes]
rs12907319	1.00[ASN][1000 genomes]
rs12910629	1.00[ASN][1000 genomes]
rs12915009	1.00[ASN][1000 genomes]
rs2733249	1.00[ASN][1000 genomes]
rs35394591	1.00[ASN][1000 genomes]
rs6493163	1.00[ASN][1000 genomes]
rs7496542	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904188	chr15:45801035-45941689	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv904190	chr15:45892672-45960897	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	27 gene(s)	inside rSNPs	n/a
4	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45927800-45935400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr15:45928200-45934200	Weak transcription	Ovary	ovary
3	chr15:45929000-45939000	Enhancers	Stomach Mucosa	stomach
4	chr15:45929400-45932800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:45929400-45933000	Weak transcription	Spleen	Spleen
6	chr15:45929800-45933000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:45929800-45934000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:45930000-45932600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:45930000-45933200	Enhancers	Esophagus	oesophagus
10	chr15:45930000-45934200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:45930000-45937800	Weak transcription	Right Ventricle	heart
12	chr15:45930200-45932000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr15:45930200-45932400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:45930200-45932400	Weak transcription	HSMMtube	muscle
15	chr15:45930200-45932400	Weak transcription	NH-A	brain
16	chr15:45930200-45932600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr15:45930200-45932600	Enhancers	HMEC	breast
18	chr15:45930200-45933000	Enhancers	Hela-S3	cervix
19	chr15:45930200-45933400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:45930200-45933400	Weak transcription	Brain Angular Gyrus	brain
21	chr15:45930200-45933400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:45930200-45933600	Weak transcription	Brain Substantia Nigra	brain
23	chr15:45930200-45933800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr15:45930200-45933800	Weak transcription	Fetal Kidney	kidney
25	chr15:45930200-45933800	Weak transcription	Fetal Lung	lung
26	chr15:45930200-45934200	Weak transcription	Brain Anterior Caudate	brain
27	chr15:45930200-45935800	Enhancers	Fetal Intestine Large	intestine
28	chr15:45930400-45932000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:45930400-45932200	Weak transcription	HSMM	muscle
30	chr15:45930400-45932400	Weak transcription	HUVEC	blood vessel
31	chr15:45930400-45932600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr15:45930400-45932600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr15:45930400-45933200	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr15:45930400-45933600	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr15:45930400-45935200	Enhancers	Colon Smooth Muscle	Colon
36	chr15:45930400-45935400	Enhancers	Fetal Intestine Small	intestine
37	chr15:45930400-45936800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr15:45930400-45940800	Weak transcription	Fetal Thymus	thymus
39	chr15:45930600-45932000	Weak transcription	Osteobl	bone
40	chr15:45930600-45932400	Enhancers	A549	lung
41	chr15:45930600-45932600	Weak transcription	Right Atrium	heart
42	chr15:45930600-45933600	Weak transcription	Brain Hippocampus Middle	brain
43	chr15:45930600-45934000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr15:45930600-45934000	Enhancers	NHLF	lung
45	chr15:45930600-45934200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr15:45930600-45934200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr15:45930600-45934200	Enhancers	Colonic Mucosa	Colon
48	chr15:45930600-45934800	Enhancers	Small Intestine	intestine
49	chr15:45930600-45940800	Weak transcription	Thymus	Thymus
50	chr15:45930800-45932400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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