Variant report

Variant	rs2735353
Chromosome Location	chr10:89802409-89802410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89621356..89623996-chr10:89801457..89803659,3	MCF-7	breast:
2	chr10:89800688..89804155-chr10:89807111..89810895,5	MCF-7	breast:
3	chr10:89620950..89624389-chr10:89798936..89802585,4	MCF-7	breast:
4	chr10:89800523..89803853-chr10:89848283..89850995,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction
ENSG00000227905	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11202639	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202641	0.90[EUR][1000 genomes]
rs2673812	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2673823	0.92[GIH][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs2735348	0.82[AFR][1000 genomes]
rs2785080	0.97[EUR][1000 genomes]
rs56146807	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs66924863	0.91[EUR][1000 genomes]
rs868872	1.00[LWK][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2735353	CFLP1	cis	lymphoblastoid	seeQTL

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89798400-89804800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr10:89798400-89805400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr10:89799400-89803400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:89800800-89802800	Enhancers	NH-A	brain
5	chr10:89800800-89803600	Enhancers	Adipose Nuclei	Adipose
6	chr10:89801000-89802800	Enhancers	Fetal Heart	heart
7	chr10:89801200-89802600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr10:89801200-89802600	Enhancers	Aorta	Aorta
9	chr10:89801200-89802800	Enhancers	Osteobl	bone
10	chr10:89801200-89803000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:89801200-89803200	Enhancers	Fetal Intestine Large	intestine
12	chr10:89801200-89803600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:89801200-89803600	Enhancers	Fetal Intestine Small	intestine
14	chr10:89801200-89803600	Enhancers	Fetal Muscle Leg	muscle
15	chr10:89801200-89804400	Enhancers	Placenta	Placenta
16	chr10:89801400-89803400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:89801400-89803400	Enhancers	Psoas Muscle	Psoas
18	chr10:89801400-89804200	Enhancers	Fetal Thymus	thymus
19	chr10:89801600-89802800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:89801600-89802800	Enhancers	Left Ventricle	heart
21	chr10:89801600-89802800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr10:89801600-89803000	Enhancers	Pancreas	Pancrea
23	chr10:89801600-89803000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr10:89801600-89803000	Enhancers	HSMM	muscle
25	chr10:89801600-89803600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:89801600-89806000	Enhancers	Dnd41	blood
27	chr10:89801600-89808400	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr10:89801800-89802800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:89801800-89802800	Weak transcription	Small Intestine	intestine
30	chr10:89801800-89802800	Flanking Active TSS	NHLF	lung
31	chr10:89801800-89803000	Flanking Active TSS	NHEK	skin
32	chr10:89801800-89803200	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr10:89801800-89803200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr10:89801800-89803200	Enhancers	Spleen	Spleen
35	chr10:89802000-89802600	Flanking Active TSS	K562	blood
36	chr10:89802000-89802800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr10:89802000-89802800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:89802000-89802800	Enhancers	Fetal Kidney	kidney
39	chr10:89802000-89803000	Enhancers	H1 Cell Line	embryonic stem cell
40	chr10:89802000-89803000	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr10:89802000-89803000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr10:89802000-89803000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr10:89802000-89803400	Weak transcription	Stomach Smooth Muscle	stomach
44	chr10:89802000-89803600	Enhancers	Thymus	Thymus
45	chr10:89802200-89802600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
46	chr10:89802200-89802600	Flanking Active TSS	HMEC	breast
47	chr10:89802200-89802800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:89802200-89802800	Flanking Active TSS	NHDF-Ad	bronchial
49	chr10:89802200-89803000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr10:89802200-89803000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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