Variant report

Variant	rs11202641
Chromosome Location	chr10:89818871-89818872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11202639	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2673812	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2673823	0.92[GIH][hapmap];0.85[TSI][hapmap]
rs2735353	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes]
rs2785080	0.89[EUR][1000 genomes]
rs4603211	0.80[AFR][1000 genomes]
rs56146807	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs66924863	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89802600-89822200	Weak transcription	Aorta	Aorta
2	chr10:89803400-89822000	Weak transcription	Psoas Muscle	Psoas
3	chr10:89814800-89820000	Weak transcription	Primary B cells from cord blood	blood
4	chr10:89818000-89819000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr10:89818000-89819000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr10:89818200-89822200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr10:89818600-89820400	Weak transcription	Spleen	Spleen
8	chr10:89818600-89822200	Weak transcription	Pancreas	Pancrea
9	chr10:89818800-89819800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr10:89818800-89820600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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