Variant report

Variant	rs2743851
Chromosome Location	chr6:15667990-15667991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15665975..15668458-chr6:16128792..16131070,2	MCF-7	breast:
2	chr6:15657500..15659223-chr6:15666722..15668599,2	K562	blood:
3	chr6:15667725..15669780-chr6:16137146..16139008,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1123073	1.00[ASN][1000 genomes]
rs17391774	1.00[ASN][1000 genomes]
rs2619536	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2619537	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2743852	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743873	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769561	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769562	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769563	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769567	1.00[ASN][1000 genomes]
rs34765387	1.00[ASN][1000 genomes]
rs62395006	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62395016	1.00[ASN][1000 genomes]
rs62396141	1.00[ASN][1000 genomes]
rs62396142	1.00[ASN][1000 genomes]
rs62396148	1.00[ASN][1000 genomes]
rs62396775	1.00[ASN][1000 genomes]
rs6908299	1.00[ASN][1000 genomes]
rs6913257	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742206	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742207	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742208	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7756793	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9283925	1.00[ASN][1000 genomes]
rs9296975	1.00[ASN][1000 genomes]
rs9464816	1.00[ASN][1000 genomes]
rs9464817	1.00[ASN][1000 genomes]
rs9464819	1.00[ASN][1000 genomes]
rs9476887	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9476890	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9476894	1.00[ASN][1000 genomes]
rs9476897	1.00[ASN][1000 genomes]
rs9476899	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2607475	chr6:15664805-15717086	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3393060	chr6:15666313-15668019	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15664000-15668200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:15664200-15668400	Weak transcription	K562	blood

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