Variant report

Variant	rs2743873
Chromosome Location	chr6:15678228-15678229
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15676527..15678703-chr6:16128031..16129735,2	MCF-7	breast:
2	chr6:15672759..15682190-chr6:16128127..16132961,11	K562	blood:
3	chr6:15676701..15679445-chr6:16128067..16130744,3	K562	blood:
4	chr6:15672874..15675125-chr6:15675945..15678266,2	K562	blood:
5	chr6:15676839..15679833-chr6:16153654..16155926,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1123073	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17391774	1.00[ASN][1000 genomes]
rs2619536	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743851	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743852	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769561	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769562	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769563	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769567	1.00[ASN][1000 genomes]
rs34765387	1.00[ASN][1000 genomes]
rs62395006	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62395016	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62396141	1.00[ASN][1000 genomes]
rs62396142	1.00[ASN][1000 genomes]
rs62396148	1.00[ASN][1000 genomes]
rs62396775	1.00[ASN][1000 genomes]
rs6908299	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913257	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742206	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742207	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742208	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7756793	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9283925	1.00[ASN][1000 genomes]
rs9296975	1.00[ASN][1000 genomes]
rs9464816	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464817	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464819	1.00[ASN][1000 genomes]
rs9476890	1.00[ASN][1000 genomes]
rs9476894	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476897	1.00[ASN][1000 genomes]
rs9476899	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2607475	chr6:15664805-15717086	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2757157	chr6:15668867-15725478	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2759408	chr6:15668867-15725478	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3692888	chr6:15675641-15694811	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15675800-15678600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:15675800-15685000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:15675800-15685000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:15676400-15678600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:15676600-15678600	Weak transcription	Fetal Intestine Small	intestine
6	chr6:15676600-15678800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:15676600-15678800	Weak transcription	Fetal Intestine Large	intestine
8	chr6:15676600-15680400	Weak transcription	Psoas Muscle	Psoas
9	chr6:15676600-15682000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:15676600-15683200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:15676800-15682000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:15677400-15678600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:15678200-15679200	Enhancers	K562	blood

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