Variant report

Variant	rs62395016
Chromosome Location	chr6:15693205-15693206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15244123..15245961-chr6:15691500..15694136,2	K562	blood:
2	chr6:15692594..15695303-chr6:15695960..15699366,3	K562	blood:
3	chr6:15690304..15694051-chr6:16129108..16131986,7	K562	blood:
4	chr6:15628080..15630749-chr6:15690393..15693220,2	K562	blood:
5	chr6:15661124..15663645-chr6:15690658..15693451,3	K562	blood:
6	chr6:15691668..15694295-chr6:16137478..16139705,2	K562	blood:
7	chr6:15687288..15693257-chr6:16127517..16131016,8	K562	blood:
8	chr6:15688875..15695962-chr6:16127988..16134034,16	MCF-7	breast:
9	chr6:15690395..15693320-chr6:16127608..16130843,10	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000271888	Chromatin interaction
ENSG00000007944	Chromatin interaction
ENSG00000047579	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1123073	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17391774	1.00[ASN][1000 genomes]
rs2619536	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743851	1.00[ASN][1000 genomes]
rs2743852	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2743873	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769561	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769562	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769563	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2769567	1.00[ASN][1000 genomes]
rs34765387	1.00[ASN][1000 genomes]
rs62395006	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62396141	1.00[ASN][1000 genomes]
rs62396142	1.00[ASN][1000 genomes]
rs62396148	1.00[ASN][1000 genomes]
rs62396775	1.00[ASN][1000 genomes]
rs6908299	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913257	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742206	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742207	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742208	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7756793	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9283925	1.00[ASN][1000 genomes]
rs9296975	1.00[ASN][1000 genomes]
rs9464816	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464817	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464819	1.00[ASN][1000 genomes]
rs9476890	1.00[ASN][1000 genomes]
rs9476894	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476897	1.00[ASN][1000 genomes]
rs9476899	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv2607475	chr6:15664805-15717086	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2757157	chr6:15668867-15725478	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2759408	chr6:15668867-15725478	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3692888	chr6:15675641-15694811	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv433377	chr6:15686225-15713759	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15692200-15698200	Weak transcription	K562	blood

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