Variant report

Variant	rs2745335
Chromosome Location	chr6:24617414-24617415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17243534	1.00[AMR][1000 genomes]
rs17249876	1.00[AMR][1000 genomes]
rs17249931	1.00[AMR][1000 genomes]
rs2760158	1.00[AMR][1000 genomes]
rs2817196	1.00[AMR][1000 genomes]
rs2817197	1.00[AMR][1000 genomes]
rs2817199	1.00[AMR][1000 genomes]
rs4712834	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020653	chr6:24557870-24638244	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24614400-24619200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:24616400-24619000	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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