Variant report

Variant	rs2817199
Chromosome Location	chr6:24576248-24576249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17243534	1.00[AMR][1000 genomes]
rs17249876	1.00[AMR][1000 genomes]
rs17249931	1.00[AMR][1000 genomes]
rs2745335	1.00[AMR][1000 genomes]
rs2760158	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2817196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2817197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4712834	1.00[AMR][1000 genomes]
rs9461036	0.91[AFR][1000 genomes]
rs9461037	0.91[AFR][1000 genomes]
rs9467211	0.91[AFR][1000 genomes]
rs9467212	0.91[AFR][1000 genomes]
rs9467217	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1020653	chr6:24557870-24638244	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24496200-24583000	Weak transcription	Hela-S3	cervix
2	chr6:24535200-24591200	Weak transcription	Fetal Brain Male	brain
3	chr6:24535600-24583400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:24539200-24583200	Weak transcription	Fetal Intestine Small	intestine
5	chr6:24548400-24583400	Weak transcription	A549	lung
6	chr6:24559600-24577600	Weak transcription	Pancreas	Pancrea
7	chr6:24562400-24583400	Weak transcription	Right Atrium	heart
8	chr6:24564400-24583400	Weak transcription	Brain Angular Gyrus	brain
9	chr6:24564400-24583400	Weak transcription	Brain Anterior Caudate	brain
10	chr6:24569200-24576600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:24570200-24583400	Weak transcription	Brain Germinal Matrix	brain
12	chr6:24570200-24583600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:24572200-24584200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:24572800-24576600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:24573600-24584000	Weak transcription	Fetal Brain Female	brain
16	chr6:24575600-24583400	Weak transcription	Brain Substantia Nigra	brain
17	chr6:24575800-24583400	Weak transcription	Primary B cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links