Variant report

Variant	rs2747491
Chromosome Location	chr6:15130890-15130891
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1884121	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2144159	0.87[EUR][1000 genomes]
rs2747485	0.86[EUR][1000 genomes]
rs2747487	0.91[EUR][1000 genomes]
rs2747490	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2747493	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2747496	0.87[EUR][1000 genomes]
rs2791608	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15116400-15132000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:15129600-15131000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:15130200-15132000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:15130200-15136400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:15130400-15131600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:15130400-15132000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:15130400-15132000	Weak transcription	Esophagus	oesophagus
8	chr6:15130400-15133400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:15130400-15135400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:15130400-15136400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:15130600-15131800	Weak transcription	Fetal Kidney	kidney
12	chr6:15130600-15132000	Weak transcription	K562	blood
13	chr6:15130600-15132000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr6:15130600-15133000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr6:15130600-15133400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:15130600-15136400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:15130800-15133200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:15130800-15136600	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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