Variant report

Variant	rs2747493
Chromosome Location	chr6:15133366-15133367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15132794..15134906-chr6:15135026..15137692,3	K562	blood:
2	chr6:15133229..15135738-chr6:15147564..15149146,2	K562	blood:
3	chr6:15131659..15133367-chr6:15138303..15139913,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1770341	0.91[CEU][hapmap];0.88[JPT][hapmap]
rs1770342	0.95[CEU][hapmap]
rs1884121	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2144159	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs2747485	0.86[EUR][1000 genomes]
rs2747487	0.91[EUR][1000 genomes]
rs2747490	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2747491	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2747496	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs2747500	0.86[CEU][hapmap]
rs2791608	0.91[EUR][1000 genomes]
rs7753952	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15130200-15136400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:15130400-15133400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:15130400-15135400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:15130400-15136400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:15130600-15133400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:15130600-15136400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:15130800-15136600	Weak transcription	GM12878-XiMat	blood
8	chr6:15131600-15133800	Enhancers	Fetal Stomach	stomach
9	chr6:15131800-15135000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:15132000-15133400	Enhancers	K562	blood
11	chr6:15132000-15134000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:15132000-15134200	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr6:15132000-15134400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:15132400-15133600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:15132400-15133600	Weak transcription	Esophagus	oesophagus
16	chr6:15132400-15134000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:15132400-15135200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:15132600-15133600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:15132600-15135800	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr6:15132800-15133600	Active TSS	A549	lung
21	chr6:15132800-15133600	Flanking Active TSS	HMEC	breast
22	chr6:15132800-15134000	Flanking Active TSS	NHEK	skin
23	chr6:15133000-15133600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr6:15133000-15133600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:15133000-15133600	Flanking Active TSS	NH-A	brain
26	chr6:15133000-15133800	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr6:15133000-15133800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:15133000-15133800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:15133000-15133800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:15133200-15133400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr6:15133200-15133400	Enhancers	Osteobl	bone
32	chr6:15133200-15133600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:15133200-15133600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr6:15133200-15133800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:15133200-15133800	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr6:15133200-15133800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr6:15133200-15134000	Enhancers	HepG2	liver
38	chr6:15133200-15134000	Enhancers	HSMM	muscle
39	chr6:15133200-15134600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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