Variant report

Variant	rs1884121
Chromosome Location	chr6:15133865-15133866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15132794..15134906-chr6:15135026..15137692,3	K562	blood:
2	chr6:15133229..15135738-chr6:15147564..15149146,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1770341	0.91[CEU][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap]
rs1770342	0.95[CEU][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs2144159	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs2747485	0.86[EUR][1000 genomes]
rs2747487	0.91[EUR][1000 genomes]
rs2747490	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2747491	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2747493	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2747496	0.87[CEU][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs2747500	0.87[CEU][hapmap];0.81[GIH][hapmap];0.97[TSI][hapmap]
rs2791608	0.91[EUR][1000 genomes]
rs7753952	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1884121	FLJ13224	trans	parietal	SCAN
rs1884121	GFOD1	cis	cerebellum	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15130200-15136400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:15130400-15135400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:15130400-15136400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:15130600-15136400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:15130800-15136600	Weak transcription	GM12878-XiMat	blood
6	chr6:15131800-15135000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:15132000-15134000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:15132000-15134200	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr6:15132000-15134400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:15132400-15134000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:15132400-15135200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:15132600-15135800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr6:15132800-15134000	Flanking Active TSS	NHEK	skin
14	chr6:15133200-15134000	Enhancers	HepG2	liver
15	chr6:15133200-15134000	Enhancers	HSMM	muscle
16	chr6:15133200-15134600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr6:15133400-15134000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr6:15133400-15135200	Weak transcription	K562	blood
19	chr6:15133600-15134000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:15133600-15134000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:15133600-15134000	Flanking Active TSS	A549	lung
22	chr6:15133600-15134000	Enhancers	NH-A	brain
23	chr6:15133600-15134000	Enhancers	Osteobl	bone
24	chr6:15133600-15135400	Enhancers	HMEC	breast
25	chr6:15133600-15137400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr6:15133800-15134800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:15133800-15135200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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