Variant report

Variant	rs275732
Chromosome Location	chr15:40200099-40200100
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40198786..40200862-chr15:40206806..40208516,2	K562	blood:
2	chr15:40198142..40201041-chr15:40203381..40204995,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs169329	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs172105	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs183914	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs275725	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs275733	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28495043	0.82[EUR][1000 genomes]
rs381732	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs404258	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs407282	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs491215	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs570518	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv832983	chr15:40098766-40248839	Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40189600-40200200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr15:40190200-40201200	Weak transcription	Aorta	Aorta
3	chr15:40194600-40211000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:40196000-40200200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:40197200-40210200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:40197400-40200600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr15:40197400-40209200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:40197800-40201200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr15:40198000-40200400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:40198000-40200600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:40198000-40200600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:40198000-40200800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:40198200-40201400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr15:40198400-40200200	Genic enhancers	NHLF	lung
15	chr15:40198600-40201600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr15:40198800-40201600	Enhancers	NHDF-Ad	bronchial
17	chr15:40199000-40201600	Enhancers	HUVEC	blood vessel
18	chr15:40199200-40200600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr15:40199200-40201600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:40199400-40201400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:40199400-40202000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:40199600-40200800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr15:40199600-40200800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr15:40199600-40201200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr15:40199600-40201400	Enhancers	HSMM	muscle
26	chr15:40199600-40201600	Enhancers	HMEC	breast
27	chr15:40199600-40201800	Enhancers	NHEK	skin
28	chr15:40199600-40202400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr15:40199800-40200400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:40199800-40200400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr15:40199800-40200400	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr15:40199800-40201200	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr15:40199800-40201200	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr15:40199800-40201400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr15:40199800-40201600	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr15:40199800-40201800	Enhancers	HSMMtube	muscle
37	chr15:40199800-40202000	Enhancers	Osteobl	bone
38	chr15:40199800-40211800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr15:40200000-40201600	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links