Variant report

Variant	rs381732
Chromosome Location	chr15:40204216-40204217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40198142..40201041-chr15:40203381..40204995,2	MCF-7	breast:
2	chr1:210545822..210547422-chr15:40202816..40204989,2	MCF-7	breast:
3	chr15:40190408..40192774-chr15:40202845..40204852,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs169329	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs172105	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs183914	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs275725	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs275732	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs275733	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28495043	0.82[EUR][1000 genomes]
rs404258	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs407282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs41487846	0.81[CEU][hapmap];0.87[TSI][hapmap]
rs491215	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4924399	0.81[CEU][hapmap]
rs570518	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs812197	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv832983	chr15:40098766-40248839	Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs381732	OIP5	cis	cerebellum	SCAN

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40194600-40211000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:40197200-40210200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:40197400-40209200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:40199800-40211800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:40200600-40207400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:40200600-40210400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:40201200-40209800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:40201400-40204800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:40201400-40211600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:40201600-40209800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:40201600-40210200	Weak transcription	HMEC	breast
12	chr15:40201600-40210200	Weak transcription	HUVEC	blood vessel
13	chr15:40201600-40210400	Weak transcription	Aorta	Aorta
14	chr15:40201800-40210200	Weak transcription	HSMMtube	muscle
15	chr15:40201800-40210400	Weak transcription	NHEK	skin
16	chr15:40202000-40209000	Weak transcription	NHLF	lung
17	chr15:40202400-40205000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr15:40202400-40207200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr15:40202600-40204600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:40202600-40207800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:40202600-40210400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:40202800-40207200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:40202800-40210200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr15:40203000-40205000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr15:40203000-40207400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:40203000-40210400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr15:40203600-40204800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr15:40203600-40206000	Genic enhancers	HUES48 Cell Line	embryonic stem cell
29	chr15:40203800-40204600	Genic enhancers	NHDF-Ad	bronchial
30	chr15:40204000-40204400	Genic enhancers	HSMM	muscle
31	chr15:40204000-40205000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr15:40204000-40207200	Weak transcription	Osteobl	bone
33	chr15:40204000-40210000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr15:40204000-40210200	Weak transcription	NH-A	brain
35	chr15:40204200-40204400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr15:40204200-40204600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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