Variant report

Variant	rs404258
Chromosome Location	chr15:40201713-40201714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs169329	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs172105	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs183914	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs275725	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs275732	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs275733	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs381732	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs407282	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs491215	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs570518	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv832979	chr15:40041928-40218407	Genic enhancers Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv832983	chr15:40098766-40248839	Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40194600-40211000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:40197200-40210200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:40197400-40209200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:40199400-40202000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:40199600-40201800	Enhancers	NHEK	skin
6	chr15:40199600-40202400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr15:40199800-40201800	Enhancers	HSMMtube	muscle
8	chr15:40199800-40202000	Enhancers	Osteobl	bone
9	chr15:40199800-40211800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr15:40200200-40202600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr15:40200400-40203000	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:40200600-40207400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr15:40200600-40210400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:40200800-40202000	Genic enhancers	NHLF	lung
15	chr15:40201000-40202600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr15:40201200-40202000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:40201200-40202600	Genic enhancers	H9 Cell Line	embryonic stem cell
18	chr15:40201200-40202600	Genic enhancers	HUES48 Cell Line	embryonic stem cell
19	chr15:40201200-40204200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr15:40201200-40209800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:40201400-40201800	Genic enhancers	HSMM	muscle
22	chr15:40201400-40202600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr15:40201400-40204800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr15:40201400-40211600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:40201600-40202400	Genic enhancers	HUES64 Cell Line	embryonic stem cell
26	chr15:40201600-40202600	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr15:40201600-40202600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:40201600-40202800	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr15:40201600-40202800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr15:40201600-40203000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr15:40201600-40203600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:40201600-40203600	Weak transcription	NH-A	brain
33	chr15:40201600-40203800	Weak transcription	NHDF-Ad	bronchial
34	chr15:40201600-40209800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:40201600-40210200	Weak transcription	HMEC	breast
36	chr15:40201600-40210200	Weak transcription	HUVEC	blood vessel
37	chr15:40201600-40210400	Weak transcription	Aorta	Aorta

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