Variant report

Variant	rs2762055
Chromosome Location	chr13:50887255-50887256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:50886873..50888479-chr13:50894394..50897216,2	K562	blood:
2	chr13:50885994..50888094-chr13:50892337..50894524,2	MCF-7	breast:
3	chr13:50886313..50888791-chr13:50890886..50892596,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1149858	0.85[ASN][1000 genomes]
rs1326125	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066696	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2109236	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532966	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532967	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2532969	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2532970	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2580182	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2580183	0.85[ASN][1000 genomes]
rs2740534	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2740535	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2740538	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2740540	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2740541	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2762061	0.85[ASN][1000 genomes]
rs2762064	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2812212	0.85[ASN][1000 genomes]
rs4942914	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs806312	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832608	chr13:50678628-50888413	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv900076	chr13:50710579-50912578	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv561632	chr13:50874346-50912578	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50884600-50892400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr13:50884600-50892600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr13:50884600-50893000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr13:50884600-50893000	Weak transcription	Thymus	Thymus
5	chr13:50884600-50893200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr13:50885200-50887400	Weak transcription	Fetal Stomach	stomach
7	chr13:50885200-50892800	Weak transcription	Fetal Thymus	thymus
8	chr13:50886000-50887400	Weak transcription	Dnd41	blood
9	chr13:50886000-50888600	Weak transcription	Fetal Lung	lung
10	chr13:50886200-50892800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr13:50886400-50887600	Enhancers	K562	blood
12	chr13:50886400-50892600	Weak transcription	Primary T cells from cord blood	blood
13	chr13:50887200-50887400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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