Variant report

Variant	rs1326125
Chromosome Location	chr13:50888893-50888894
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50882429..50885406-chr13:50887797..50889708,2	K562	blood:

Variant related genes	Relation type
ENSG00000176124	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1149858	0.85[ASN][1000 genomes]
rs1409279	0.82[CHB][hapmap];0.95[CHD][hapmap];0.84[GIH][hapmap];0.93[JPT][hapmap];0.82[MKK][hapmap]
rs1410113	0.81[JPT][hapmap]
rs2066684	0.82[CHB][hapmap];0.93[JPT][hapmap]
rs2066696	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2109236	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532966	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2532967	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2532969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2532970	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2532973	0.83[EUR][1000 genomes]
rs2580182	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2580183	0.85[ASN][1000 genomes]
rs2740534	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2740535	1.00[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.93[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2740538	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2740540	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2740541	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2762055	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2762059	0.83[GIH][hapmap];0.80[TSI][hapmap]
rs2762061	0.85[ASN][1000 genomes]
rs2762064	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2812212	0.85[ASN][1000 genomes]
rs4942914	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs806312	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs806352	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv900076	chr13:50710579-50912578	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv561632	chr13:50874346-50912578	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50884600-50892400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr13:50884600-50892600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr13:50884600-50893000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr13:50884600-50893000	Weak transcription	Thymus	Thymus
5	chr13:50884600-50893200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr13:50885200-50892800	Weak transcription	Fetal Thymus	thymus
7	chr13:50886200-50892800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr13:50886400-50892600	Weak transcription	Primary T cells from cord blood	blood
9	chr13:50887400-50889200	Enhancers	Dnd41	blood
10	chr13:50887600-50892600	Weak transcription	K562	blood

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