Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1149858	0.89[ASN][1000 genomes]
rs1326125	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2066696	0.85[ASN][1000 genomes]
rs2109236	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532966	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2532967	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2532969	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2532970	0.88[ASN][1000 genomes]
rs2532973	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2580182	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2580183	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2740534	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2740535	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2740538	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2740540	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2740541	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2762055	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2762061	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2812212	0.89[ASN][1000 genomes]
rs4942914	0.89[ASN][1000 genomes]
rs806312	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50913000-50921000	Weak transcription	HepG2	liver
2	chr13:50915000-50928200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:50918000-50920400	Enhancers	Fetal Thymus	thymus
4	chr13:50918000-50920400	Enhancers	Thymus	Thymus
5	chr13:50918400-50920400	Enhancers	Dnd41	blood
6	chr13:50918600-50919600	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr13:50918600-50920200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr13:50918800-50919800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr13:50919000-50919600	Enhancers	Primary hematopoietic stem cells	blood
10	chr13:50919000-50920800	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr13:50919400-50921400	Weak transcription	Rectal Mucosa Donor 29	rectum

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