Variant report

Variant	rs806352
Chromosome Location	chr13:50863919-50863920
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1326125	0.82[CHB][hapmap]
rs1359614	0.81[ASN][1000 genomes]
rs1409279	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs2066678	0.81[ASN][1000 genomes]
rs2066681	0.81[ASN][1000 genomes]
rs2066683	0.81[ASN][1000 genomes]
rs2066684	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2066693	0.80[AMR][1000 genomes]
rs2532969	0.81[JPT][hapmap]
rs2580196	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2740526	0.81[ASN][1000 genomes]
rs2740527	0.81[ASN][1000 genomes]
rs2740535	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs2812200	0.91[ASN][1000 genomes]
rs2812201	0.81[ASN][1000 genomes]
rs4340216	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs806327	0.88[ASN][1000 genomes]
rs806328	0.85[EUR][1000 genomes]
rs806332	0.88[ASN][1000 genomes]
rs806334	0.85[EUR][1000 genomes]
rs806335	0.88[ASN][1000 genomes]
rs806336	0.88[ASN][1000 genomes]
rs806341	0.81[ASN][1000 genomes]
rs806344	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs806349	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832608	chr13:50678628-50888413	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv900076	chr13:50710579-50912578	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50857000-50865000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:50858800-50864600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr13:50861400-50869200	Weak transcription	HepG2	liver
4	chr13:50863000-50868600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr13:50863400-50866000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr13:50863600-50865200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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