Variant report

Variant	rs806344
Chromosome Location	chr13:50857421-50857422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:50854880..50857569-chr13:50892767..50895281,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1326125	0.81[CHD][hapmap]
rs1359614	0.92[ASN][1000 genomes]
rs1409279	0.82[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs1409280	0.86[ASN][1000 genomes]
rs2066677	0.89[ASN][1000 genomes]
rs2066678	0.92[ASN][1000 genomes]
rs2066681	0.92[ASN][1000 genomes]
rs2066683	0.92[ASN][1000 genomes]
rs2066684	0.82[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs2066696	0.81[ASN][1000 genomes]
rs2532969	0.82[JPT][hapmap]
rs2580196	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2703084	0.86[ASN][1000 genomes]
rs2703089	0.81[ASN][1000 genomes]
rs2740526	0.92[ASN][1000 genomes]
rs2740527	0.92[ASN][1000 genomes]
rs2762053	0.87[ASN][1000 genomes]
rs2765761	0.86[ASN][1000 genomes]
rs2812200	0.82[ASN][1000 genomes]
rs2812201	0.92[ASN][1000 genomes]
rs806323	0.86[ASN][1000 genomes]
rs806324	0.86[ASN][1000 genomes]
rs806325	0.89[ASN][1000 genomes]
rs806326	0.89[ASN][1000 genomes]
rs806330	0.89[ASN][1000 genomes]
rs806338	0.83[ASN][1000 genomes]
rs806341	0.92[ASN][1000 genomes]
rs806352	0.82[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs806355	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv832608	chr13:50678628-50888413	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
6	nsv900076	chr13:50710579-50912578	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50855000-50860200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:50855400-50858600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr13:50856000-50858400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr13:50856000-50858600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr13:50856400-50859400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr13:50856600-50857600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr13:50856800-50857800	Enhancers	Liver	Liver
8	chr13:50856800-50858400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr13:50856800-50861000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr13:50857000-50863200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr13:50857000-50865000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr13:50857400-50857600	Flanking Active TSS	HepG2	liver
13	chr13:50857400-50858800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr13:50857400-50860200	Enhancers	Primary neutrophils fromperipheralblood	blood

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