Variant report

Variant	rs276839
Chromosome Location	chr2:114771432-114771433
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1040292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11123213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11123220	1.00[AMR][1000 genomes]
rs156725	1.00[AMR][1000 genomes]
rs156730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs469010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4849292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6732715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958206	1.00[AMR][1000 genomes]
rs7570281	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874904	chr2:114751691-115605062	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114764800-114778200	Weak transcription	Pancreas	Pancrea
2	chr2:114768000-114779600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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