Variant report

Variant	rs6732715
Chromosome Location	chr2:114687581-114687582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:114685891-114687718	GM12878	blood:	n/a	n/a
2	POLR2A	chr2:114685753-114687629	GM12878	blood:	n/a	n/a
3	POLR2A	chr2:114686987-114687641	K562	blood:	n/a	n/a
4	POLR2A	chr2:114686497-114687610	GM12892	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr2:114683951..114686623-chr2:114687436..114690346,2	MCF-7	breast:
2	chr2:114668940..114671388-chr2:114686835..114689758,2	MCF-7	breast:
3	chr2:114684369..114685954-chr2:114687461..114689081,2	K562	blood:

Variant related genes	Relation type
ACTR3	TF binding region
ENSG00000115091	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1040292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11123213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11123220	1.00[AMR][1000 genomes]
rs156725	1.00[AMR][1000 genomes]
rs156730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs276839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs469010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4849292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72958206	1.00[AMR][1000 genomes]
rs7570281	1.00[AMR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:114652200-114700600	Weak transcription	Fetal Brain Male	brain
2	chr2:114653600-114734800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:114658000-114689400	Weak transcription	Fetal Heart	heart
4	chr2:114662800-114690600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:114665400-114692800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:114667400-114700800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:114667800-114705000	Weak transcription	Esophagus	oesophagus
8	chr2:114668000-114690800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr2:114668200-114692600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr2:114668200-114695800	Weak transcription	Psoas Muscle	Psoas
11	chr2:114668200-114704800	Weak transcription	Gastric	stomach
12	chr2:114668400-114696200	Weak transcription	Small Intestine	intestine
13	chr2:114668400-114735000	Weak transcription	Stomach Mucosa	stomach
14	chr2:114668600-114692800	Weak transcription	Colon Smooth Muscle	Colon
15	chr2:114668800-114703200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr2:114669400-114693400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr2:114670800-114693000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:114670800-114717400	Strong transcription	Fetal Thymus	thymus
19	chr2:114670800-114719000	Strong transcription	Dnd41	blood
20	chr2:114671000-114695000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:114671000-114704800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr2:114671000-114720000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr2:114671200-114692800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr2:114671200-114694000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr2:114672000-114723200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr2:114673000-114703000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr2:114674400-114715800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr2:114675000-114691600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr2:114676000-114706200	Weak transcription	Hela-S3	cervix
30	chr2:114676200-114696200	Weak transcription	Pancreas	Pancrea
31	chr2:114676200-114704800	Weak transcription	Spleen	Spleen
32	chr2:114676600-114691800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr2:114676600-114695000	Weak transcription	Brain Hippocampus Middle	brain
34	chr2:114676600-114695800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr2:114676600-114719800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr2:114676800-114691800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr2:114678200-114690200	Strong transcription	HUVEC	blood vessel
38	chr2:114679200-114689000	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr2:114679400-114693000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr2:114679800-114692800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr2:114680200-114703200	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr2:114680400-114721200	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr2:114680800-114689000	Weak transcription	Fetal Kidney	kidney
44	chr2:114681200-114688000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr2:114681400-114695000	Strong transcription	Liver	Liver
46	chr2:114681600-114687600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr2:114681600-114688000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr2:114681600-114717600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr2:114681600-114719400	Strong transcription	NH-A	brain
50	chr2:114681800-114722600	Strong transcription	Monocytes-CD14+_RO01746	blood

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