Variant report

Variant	rs2770221
Chromosome Location	chr13:98192342-98192343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1410268	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs173240	1.00[EUR][1000 genomes]
rs189446	1.00[EUR][1000 genomes]
rs349123	1.00[EUR][1000 genomes]
rs419815	1.00[EUR][1000 genomes]
rs440811	1.00[EUR][1000 genomes]
rs57518020	1.00[EUR][1000 genomes]
rs7331838	1.00[EUR][1000 genomes]
rs74106504	1.00[EUR][1000 genomes]
rs884210	1.00[EUR][1000 genomes]
rs913396	1.00[EUR][1000 genomes]
rs9582148	1.00[EUR][1000 genomes]
rs9582149	1.00[EUR][1000 genomes]
rs9584614	1.00[EUR][1000 genomes]
rs9584622	1.00[EUR][1000 genomes]
rs9584623	1.00[EUR][1000 genomes]
rs9584624	1.00[EUR][1000 genomes]
rs9584627	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98188400-98192800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:98190400-98193400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:98190600-98193800	Weak transcription	Lung	lung
4	chr13:98191800-98192400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:98191800-98192400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr13:98191800-98193000	Enhancers	NHDF-Ad	bronchial
7	chr13:98191800-98195200	Enhancers	Fetal Lung	lung
8	chr13:98192200-98192400	Enhancers	Fetal Heart	heart
9	chr13:98192200-98192800	Enhancers	Fetal Kidney	kidney
10	chr13:98192200-98193400	Enhancers	Adipose Nuclei	Adipose

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links