Variant report

Variant	rs9584622
Chromosome Location	chr13:98250059-98250060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1410268	1.00[EUR][1000 genomes]
rs173240	1.00[EUR][1000 genomes]
rs189446	1.00[EUR][1000 genomes]
rs2769289	0.84[AFR][1000 genomes]
rs2770221	1.00[EUR][1000 genomes]
rs349123	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs419815	1.00[EUR][1000 genomes]
rs440811	1.00[EUR][1000 genomes]
rs57518020	1.00[EUR][1000 genomes]
rs7331838	1.00[EUR][1000 genomes]
rs74106504	1.00[EUR][1000 genomes]
rs884210	1.00[EUR][1000 genomes]
rs913396	1.00[EUR][1000 genomes]
rs9582148	1.00[EUR][1000 genomes]
rs9582149	1.00[EUR][1000 genomes]
rs9584614	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9584623	1.00[EUR][1000 genomes]
rs9584624	1.00[EUR][1000 genomes]
rs9584627	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900940	chr13:98225221-98281637	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900941	chr13:98230575-98267751	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1140	chr13:98233230-98278197	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98249800-98250800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr13:98249800-98251000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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