Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1410268	1.00[EUR][1000 genomes]
rs173240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs189446	1.00[EUR][1000 genomes]
rs2769289	0.90[AFR][1000 genomes]
rs2770221	1.00[EUR][1000 genomes]
rs349123	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs393310	1.00[AMR][1000 genomes]
rs419815	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs440811	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57518020	1.00[EUR][1000 genomes]
rs7331838	1.00[EUR][1000 genomes]
rs74106504	1.00[EUR][1000 genomes]
rs884210	1.00[EUR][1000 genomes]
rs913396	1.00[EUR][1000 genomes]
rs9582148	1.00[EUR][1000 genomes]
rs9582149	1.00[EUR][1000 genomes]
rs9584622	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9584623	1.00[EUR][1000 genomes]
rs9584624	1.00[EUR][1000 genomes]
rs9584627	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043113	chr13:98136208-98485012	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541884	chr13:98136208-98485012	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900940	chr13:98225221-98281637	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv900941	chr13:98230575-98267751	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1140	chr13:98233230-98278197	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98232600-98237400	Enhancers	Fetal Intestine Large	intestine
2	chr13:98234200-98237400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr13:98235600-98237800	Enhancers	HepG2	liver
4	chr13:98235800-98237400	Enhancers	Fetal Intestine Small	intestine
5	chr13:98236000-98237800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr13:98236200-98237000	Enhancers	Fetal Heart	heart
7	chr13:98236200-98237200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:98236600-98237000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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