Variant report

Variant	rs2772372
Chromosome Location	chr6:33427350-33427351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33284995..33286876-chr6:33425293..33427884,2	K562	blood:
2	chr6:33420716..33423684-chr6:33426198..33429030,3	MCF-7	breast:
3	chr6:33420865..33423368-chr6:33425869..33429476,4	MCF-7	breast:
4	chr6:33425473..33427450-chr6:33429815..33431643,2	K562	blood:
5	chr6:33421135..33425238-chr6:33425699..33429689,6	K562	blood:
6	chr6:33219097..33221365-chr6:33427098..33429483,3	K562	blood:

Variant related genes	Relation type
ENSG00000213588	Chromatin interaction
ENSG00000236104	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs210125	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs210163	1.00[JPT][hapmap]
rs422652	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs449978	1.00[CEU][hapmap]
rs6910721	0.91[CEU][hapmap]
rs7759963	0.85[ASN][1000 genomes]
rs7762843	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33423200-33429000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:33423400-33430800	Weak transcription	Gastric	stomach
3	chr6:33423600-33429000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:33423800-33427400	Strong transcription	Fetal Brain Female	brain
5	chr6:33423800-33429200	Weak transcription	Fetal Brain Male	brain
6	chr6:33424200-33427600	Weak transcription	Fetal Intestine Large	intestine
7	chr6:33424200-33431200	Weak transcription	HepG2	liver
8	chr6:33424200-33439200	Weak transcription	Pancreas	Pancrea
9	chr6:33424400-33427600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr6:33424400-33427600	Weak transcription	Ovary	ovary
11	chr6:33424400-33428000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:33424600-33433800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:33424600-33434400	Weak transcription	Fetal Intestine Small	intestine
14	chr6:33425200-33427400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:33425200-33427600	Weak transcription	NH-A	brain
16	chr6:33425200-33427800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:33425200-33428000	Weak transcription	Dnd41	blood
18	chr6:33425200-33428200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:33425200-33428200	Weak transcription	HSMMtube	muscle
20	chr6:33425200-33428400	Weak transcription	HSMM	muscle
21	chr6:33425200-33429400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:33425200-33429800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:33425400-33427400	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr6:33425400-33427800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:33425400-33428000	Weak transcription	Lung	lung
26	chr6:33425400-33428200	Weak transcription	Fetal Muscle Leg	muscle
27	chr6:33425400-33428400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:33425400-33429600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:33425600-33427400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:33425600-33427400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:33425600-33427400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr6:33425600-33428000	Weak transcription	NHLF	lung
33	chr6:33425600-33428200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr6:33425600-33428200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:33425600-33428400	Weak transcription	Brain Germinal Matrix	brain
36	chr6:33425600-33434400	Weak transcription	Duodenum Mucosa	Duodenum
37	chr6:33426200-33427600	Enhancers	K562	blood

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