Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:33424166..33426973-chr6:33429815..33431845,2	K562	blood:
2	chr6:33399216..33401242-chr6:33429198..33431670,2	K562	blood:
3	chr6:33425473..33427450-chr6:33429815..33431643,2	K562	blood:
4	chr6:33423454..33426241-chr6:33429192..33432961,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197283	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11759285	0.87[AFR][1000 genomes]
rs12529825	1.00[JPT][hapmap]
rs1536042	1.00[JPT][hapmap]
rs16869178	1.00[JPT][hapmap]
rs1755044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395451	1.00[JPT][hapmap]
rs2772385	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2772386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3130033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711333	1.00[JPT][hapmap]
rs4713647	1.00[JPT][hapmap]
rs480568	1.00[JPT][hapmap]
rs485623	1.00[JPT][hapmap]
rs557559	1.00[JPT][hapmap]
rs55768702	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560218	1.00[JPT][hapmap]
rs561276	1.00[JPT][hapmap]
rs60719642	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61421477	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7752930	1.00[JPT][hapmap]
rs7757722	1.00[JPT][hapmap]
rs7759963	0.81[AMR][1000 genomes]
rs7762843	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33424200-33439200	Weak transcription	Pancreas	Pancrea
2	chr6:33424600-33433800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:33424600-33434400	Weak transcription	Fetal Intestine Small	intestine
4	chr6:33425600-33434400	Weak transcription	Duodenum Mucosa	Duodenum

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