The 2.0 version of rSNPBase

Variant report

Variant rs2782489
Chromosome Location chr1:46019775-46019776
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46017000-46025800 Weak transcription Spleen Spleen
2 chr1:46017400-46020000 Weak transcription Ovary ovary
3 chr1:46017400-46023000 Weak transcription Psoas Muscle Psoas
4 chr1:46017400-46027000 Weak transcription Aorta Aorta
5 chr1:46017400-46027400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr1:46017800-46019800 Weak transcription Brain Angular Gyrus brain
7 chr1:46017800-46020000 Weak transcription A549 lung
8 chr1:46017800-46021400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr1:46017800-46023000 Weak transcription ES-I3 Cell Line embryonic stem cell
10 chr1:46017800-46023000 Weak transcription Rectal Smooth Muscle rectum
11 chr1:46017800-46026800 Weak transcription Brain Cingulate Gyrus brain
12 chr1:46017800-46026800 Weak transcription Brain Substantia Nigra brain
13 chr1:46017800-46026800 Weak transcription HSMMtube muscle
14 chr1:46017800-46027200 Weak transcription Placenta Amnion Placenta Amnion
15 chr1:46017800-46027400 Weak transcription Brain Hippocampus Middle brain
16 chr1:46017800-46027400 Weak transcription Brain Inferior Temporal Lobe brain
17 chr1:46017800-46027400 Weak transcription Gastric stomach
18 chr1:46017800-46032200 Weak transcription Brain Anterior Caudate brain
19 chr1:46017800-46038800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
20 chr1:46018000-46019800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
21 chr1:46018000-46021400 Weak transcription Thymus Thymus
22 chr1:46018000-46021400 Weak transcription HSMM muscle
23 chr1:46018000-46027400 Weak transcription Primary neutrophils fromperipheralblood blood
24 chr1:46018000-46032200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
25 chr1:46018000-46038600 Weak transcription Pancreatic Islets Pancreatic Islet
26 chr1:46018200-46019800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
27 chr1:46018200-46019800 Weak transcription Cortex derived primary cultured neurospheres brain
28 chr1:46018200-46020000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
29 chr1:46018200-46020400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
30 chr1:46018200-46022000 Strong transcription iPS-15b Cell Line embryonic stem cell
31 chr1:46018200-46022200 Strong transcription HUES6 Cell Line embryonic stem cell
32 chr1:46018200-46023000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr1:46018200-46037400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr1:46018400-46019800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
35 chr1:46018400-46019800 Weak transcription Fetal Brain Female brain
36 chr1:46018400-46019800 Weak transcription Placenta Placenta
37 chr1:46018400-46020000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
38 chr1:46018400-46020000 Weak transcription Breast Myoepithelial Primary Cells Breast
39 chr1:46018400-46020000 Weak transcription Primary hematopoietic stem cells blood
40 chr1:46018400-46020000 Weak transcription Skeletal Muscle Male skeletal muscle
41 chr1:46018400-46020400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
42 chr1:46018400-46020400 Enhancers HepG2 liver
43 chr1:46018400-46020800 Genic enhancers Fetal Intestine Small intestine
44 chr1:46018400-46021200 Weak transcription Brain Germinal Matrix brain
45 chr1:46018400-46021400 Weak transcription Primary T helper cells PMA-I stimulated --
46 chr1:46018400-46021400 Weak transcription NH-A brain
47 chr1:46018400-46022000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr1:46018400-46022000 Genic enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr1:46018400-46022000 Strong transcription Duodenum Smooth Muscle Duodenum
50 chr1:46018400-46022000 Strong transcription Fetal Adrenal Gland Adrenal Gland

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Last update: Aug 31, 2015