Variant report
| Variant | rs2782762 |
|---|---|
| Chromosome Location | chr1:71131339-71131340 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr1:71131335-71131412 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:71131135..71133902-chr1:71140118..71142284,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CASP3P1 | TF binding region |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs12073510 | 0.88[ASN][1000 genomes] |
| rs1334995 | 1.00[CHB][hapmap];0.93[CHD][hapmap] |
| rs17131372 | 0.83[ASN][1000 genomes] |
| rs1932057 | 0.85[ASN][1000 genomes] |
| rs2152125 | 0.83[ASN][1000 genomes] |
| rs2782763 | 1.00[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs2782764 | 0.83[ASN][1000 genomes] |
| rs2820529 | 0.88[ASN][1000 genomes] |
| rs2820532 | 0.89[ASN][1000 genomes] |
| rs61778683 | 0.88[ASN][1000 genomes] |
| rs72684717 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv871024 | chr1:71088106-71169865 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs2782762 | WLS | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
