Variant report

Variant	rs2786206
Chromosome Location	chr6:114653446-114653447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114653028..114655061-chr6:114658099..114660721,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1856117	0.98[AFR][1000 genomes]
rs2031139	0.87[AFR][1000 genomes]
rs2065933	0.87[AFR][1000 genomes]
rs57078191	0.89[AFR][1000 genomes]
rs57397327	0.89[AFR][1000 genomes]
rs60232257	0.88[AFR][1000 genomes]
rs60233932	0.85[AFR][1000 genomes]
rs61602782	0.89[AFR][1000 genomes]
rs6900066	0.88[AFR][1000 genomes]
rs6932472	0.88[AFR][1000 genomes]
rs73767409	0.88[AFR][1000 genomes]
rs73767452	0.88[AFR][1000 genomes]
rs73767454	0.87[AFR][1000 genomes]
rs73769206	0.81[AFR][1000 genomes]
rs785134	0.91[AFR][1000 genomes]
rs785140	0.94[AFR][1000 genomes]
rs785141	0.95[AFR][1000 genomes]
rs945786	0.91[AFR][1000 genomes]
rs9481441	0.82[AFR][1000 genomes]
rs9481448	0.81[AFR][1000 genomes]
rs9488372	0.98[AFR][1000 genomes]
rs9488374	0.88[AFR][1000 genomes]
rs9488377	0.88[AFR][1000 genomes]
rs9488381	0.81[AFR][1000 genomes]
rs9488382	0.80[AFR][1000 genomes]
rs9488385	0.81[AFR][1000 genomes]
rs9488386	0.81[AFR][1000 genomes]
rs9488387	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	esv34434	chr6:114465305-115462799	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv464024	chr6:114489321-114837181	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
4	nsv604544	chr6:114489321-114837181	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	esv3692910	chr6:114597419-115480580	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv528128	chr6:114597657-115471129	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv818451	chr6:114597657-115471129	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114646600-114655400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:114650000-114655000	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:114650000-114658200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:114650600-114655000	Weak transcription	Brain Angular Gyrus	brain
5	chr6:114650800-114654400	Weak transcription	Brain Anterior Caudate	brain
6	chr6:114650800-114655200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:114650800-114655200	Weak transcription	Brain Substantia Nigra	brain
8	chr6:114650800-114660400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:114651000-114655400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:114651600-114655400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr6:114651800-114655200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:114652000-114654000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:114652000-114660800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:114652200-114653600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr6:114652200-114655000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:114652200-114655200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:114652400-114655400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:114652400-114655800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:114653400-114654200	Weak transcription	Brain Inferior Temporal Lobe	brain

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