Variant report

Variant	rs6900066
Chromosome Location	chr6:114676059-114676060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114670440..114672596-chr6:114674899..114677569,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000218089	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10080647	0.81[YRI][hapmap]
rs1856117	0.90[AFR][1000 genomes]
rs2031139	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2065933	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2786206	0.88[AFR][1000 genomes]
rs60232257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6932472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73767452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73767454	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73769206	0.92[AFR][1000 genomes]
rs785140	0.83[AFR][1000 genomes]
rs785141	0.84[AFR][1000 genomes]
rs945786	0.88[YRI][hapmap]
rs9481441	0.94[AFR][1000 genomes]
rs9481448	0.83[AFR][1000 genomes]
rs9488372	0.90[AFR][1000 genomes]
rs9488374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9488377	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9488381	0.92[AFR][1000 genomes]
rs9488382	0.82[AFR][1000 genomes]
rs9488385	0.92[AFR][1000 genomes]
rs9488386	0.92[AFR][1000 genomes]
rs9488387	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024062	chr6:114311029-114679557	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	esv34434	chr6:114465305-115462799	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv464024	chr6:114489321-114837181	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
4	nsv604544	chr6:114489321-114837181	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
5	esv3692910	chr6:114597419-115480580	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
6	nsv528128	chr6:114597657-115471129	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv818451	chr6:114597657-115471129	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv428494	chr6:114666307-114774841	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	esv2758074	chr6:114666308-115526957	Enhancers Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
10	nsv519688	chr6:114676059-114677830	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv526353	chr6:114676059-114677830	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114666600-114681800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr6:114667000-114680600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:114667000-114681600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:114668800-114681800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:114675800-114676400	Enhancers	Fetal Heart	heart
6	chr6:114675800-114676800	Enhancers	HSMMtube	muscle

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