Variant report

Variant	rs2786758
Chromosome Location	chr1:168726317-168726318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168721671..168723479-chr1:168723958..168727658,3	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1018453	0.83[CHB][hapmap]
rs1018454	0.88[ASN][1000 genomes]
rs10489362	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1052591	0.83[CHB][hapmap]
rs10800378	1.00[ASN][1000 genomes]
rs10918970	0.89[ASN][1000 genomes]
rs10918972	0.85[ASN][1000 genomes]
rs12563398	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12567476	0.84[EUR][1000 genomes]
rs12568207	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12724380	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12728858	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12739280	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12742262	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12748557	0.83[CHB][hapmap]
rs12755391	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1555206	0.83[CHB][hapmap]
rs1556791	0.83[CHB][hapmap]
rs1556792	0.83[CHB][hapmap]
rs1556793	0.83[CHB][hapmap]
rs17569416	0.89[CEU][hapmap];0.83[CHB][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1765516	0.83[CHB][hapmap]
rs1765517	0.84[EUR][1000 genomes]
rs1989300	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2206288	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2206289	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2206290	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2223478	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2744658	0.82[CHD][hapmap]
rs2744659	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2744661	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2744666	0.81[CHD][hapmap];0.94[JPT][hapmap]
rs2786759	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2786760	0.81[ASN][1000 genomes]
rs35723976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs472668	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs484025	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs485109	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs485187	0.94[JPT][hapmap]
rs485855	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs489585	0.84[ASN][1000 genomes]
rs494189	0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs525275	0.93[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs534139	0.89[CEU][hapmap];0.83[CHB][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs538714	0.89[CEU][hapmap];0.83[CHB][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs542198	0.87[ASW][hapmap];0.89[CEU][hapmap];0.83[CHB][hapmap];0.82[CHD][hapmap];0.89[GIH][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs552859	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs555676	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs567067	0.94[JPT][hapmap]
rs582986	0.86[ASN][1000 genomes]
rs609629	0.92[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs610403	0.92[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs623949	0.80[ASN][1000 genomes]
rs625712	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs627872	0.87[ASW][hapmap];0.89[CEU][hapmap];0.83[CHB][hapmap];0.82[CHD][hapmap];0.89[GIH][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs628718	0.83[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs6427147	0.90[ASN][1000 genomes]
rs6427148	0.87[ASW][hapmap];0.89[CEU][hapmap];0.83[CHB][hapmap];0.82[CHD][hapmap];0.89[GIH][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6427149	0.82[ASN][1000 genomes]
rs6427150	1.00[ASN][1000 genomes]
rs655128	0.84[CEU][hapmap];0.83[CHB][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs656919	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6656646	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6675239	0.99[ASN][1000 genomes]
rs6690929	1.00[ASN][1000 genomes]
rs6697889	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6701299	0.89[CEU][hapmap];0.83[CHB][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs672950	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs686610	0.92[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs731949	0.83[CHB][hapmap]
rs734123	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7534485	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs760912	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs760913	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs761519	0.92[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs763433	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168722000-168728200	Weak transcription	Pancreas	Pancrea
2	chr1:168722200-168727400	Weak transcription	Fetal Intestine Small	intestine
3	chr1:168724800-168726400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:168725400-168729600	Weak transcription	Left Ventricle	heart
5	chr1:168725600-168727200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:168726000-168729400	Weak transcription	Fetal Heart	heart
7	chr1:168726200-168736600	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links