Variant report

Variant	rs489585
Chromosome Location	chr1:168713812-168713813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1018453	0.89[ASN][1000 genomes]
rs10489362	0.84[ASN][1000 genomes]
rs1052591	0.89[ASN][1000 genomes]
rs10800378	0.84[ASN][1000 genomes]
rs12563398	1.00[ASN][1000 genomes]
rs12567476	0.94[ASN][1000 genomes]
rs12568207	1.00[ASN][1000 genomes]
rs12724380	0.99[ASN][1000 genomes]
rs12728858	1.00[ASN][1000 genomes]
rs12731369	0.89[ASN][1000 genomes]
rs12735097	0.94[ASN][1000 genomes]
rs12739280	0.84[ASN][1000 genomes]
rs12742262	1.00[ASN][1000 genomes]
rs12748557	0.94[ASN][1000 genomes]
rs12755391	1.00[ASN][1000 genomes]
rs1555206	0.90[ASN][1000 genomes]
rs1556790	0.91[ASN][1000 genomes]
rs1556791	0.91[ASN][1000 genomes]
rs1556792	0.91[ASN][1000 genomes]
rs1556793	0.91[ASN][1000 genomes]
rs17569416	1.00[ASN][1000 genomes]
rs1765516	0.94[ASN][1000 genomes]
rs1765517	0.95[ASN][1000 genomes]
rs1989300	1.00[ASN][1000 genomes]
rs2206288	1.00[ASN][1000 genomes]
rs2206289	1.00[ASN][1000 genomes]
rs2206290	1.00[ASN][1000 genomes]
rs2223478	1.00[ASN][1000 genomes]
rs2744658	0.89[ASN][1000 genomes]
rs2744659	1.00[ASN][1000 genomes]
rs2744661	1.00[ASN][1000 genomes]
rs2744665	0.84[ASN][1000 genomes]
rs2786758	0.84[ASN][1000 genomes]
rs2786759	0.84[ASN][1000 genomes]
rs2786760	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2786762	0.84[ASN][1000 genomes]
rs35723976	0.84[ASN][1000 genomes]
rs472668	1.00[ASN][1000 genomes]
rs484025	1.00[ASN][1000 genomes]
rs485109	1.00[ASN][1000 genomes]
rs485855	1.00[ASN][1000 genomes]
rs525275	0.97[ASN][1000 genomes]
rs534139	1.00[ASN][1000 genomes]
rs538714	1.00[ASN][1000 genomes]
rs542198	1.00[ASN][1000 genomes]
rs552859	0.84[ASN][1000 genomes]
rs555676	1.00[ASN][1000 genomes]
rs609629	0.96[ASN][1000 genomes]
rs610403	0.96[ASN][1000 genomes]
rs623949	0.96[ASN][1000 genomes]
rs625712	1.00[ASN][1000 genomes]
rs627872	1.00[ASN][1000 genomes]
rs6427148	1.00[ASN][1000 genomes]
rs6427149	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6427150	0.84[ASN][1000 genomes]
rs655128	1.00[ASN][1000 genomes]
rs656919	1.00[ASN][1000 genomes]
rs6656646	1.00[ASN][1000 genomes]
rs6666079	0.94[ASN][1000 genomes]
rs6675239	0.84[ASN][1000 genomes]
rs6678818	0.94[ASN][1000 genomes]
rs6687926	0.80[ASN][1000 genomes]
rs6688207	0.83[ASN][1000 genomes]
rs6690929	0.84[ASN][1000 genomes]
rs6693709	0.81[ASN][1000 genomes]
rs6697889	1.00[ASN][1000 genomes]
rs6701299	1.00[ASN][1000 genomes]
rs672950	1.00[ASN][1000 genomes]
rs686610	1.00[ASN][1000 genomes]
rs731949	0.89[ASN][1000 genomes]
rs734123	1.00[ASN][1000 genomes]
rs7534485	1.00[ASN][1000 genomes]
rs760912	1.00[ASN][1000 genomes]
rs760913	1.00[ASN][1000 genomes]
rs763433	1.00[ASN][1000 genomes]
rs926431	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831836	chr1:168538779-168716956	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168701800-168720400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:168711200-168724200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:168713800-168714000	Weak transcription	HepG2	liver

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