Variant report

Variant	rs6675239
Chromosome Location	chr1:168714041-168714042
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1018454	0.89[ASN][1000 genomes]
rs10489362	1.00[ASN][1000 genomes]
rs10800378	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10918970	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10918972	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12563398	0.84[ASN][1000 genomes]
rs12568207	0.84[ASN][1000 genomes]
rs12724380	0.83[ASN][1000 genomes]
rs12728858	0.84[ASN][1000 genomes]
rs12739280	1.00[ASN][1000 genomes]
rs12742262	0.84[ASN][1000 genomes]
rs12755391	0.84[ASN][1000 genomes]
rs17569416	0.84[ASN][1000 genomes]
rs1765517	0.80[ASN][1000 genomes]
rs1989300	0.84[ASN][1000 genomes]
rs2206288	0.84[ASN][1000 genomes]
rs2206289	0.84[ASN][1000 genomes]
rs2206290	0.84[ASN][1000 genomes]
rs2223478	0.84[ASN][1000 genomes]
rs2744659	0.84[ASN][1000 genomes]
rs2744661	0.84[ASN][1000 genomes]
rs2786758	0.99[ASN][1000 genomes]
rs2786759	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2786760	0.82[ASN][1000 genomes]
rs35723976	0.99[ASN][1000 genomes]
rs472668	0.84[ASN][1000 genomes]
rs484025	0.84[ASN][1000 genomes]
rs485109	0.84[ASN][1000 genomes]
rs485187	0.83[EUR][1000 genomes]
rs485855	0.84[ASN][1000 genomes]
rs489585	0.84[ASN][1000 genomes]
rs494189	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs525275	0.82[ASN][1000 genomes]
rs534139	0.84[ASN][1000 genomes]
rs538714	0.84[ASN][1000 genomes]
rs542198	0.84[ASN][1000 genomes]
rs552859	1.00[ASN][1000 genomes]
rs555676	0.84[ASN][1000 genomes]
rs567067	0.82[EUR][1000 genomes]
rs582986	0.87[ASN][1000 genomes]
rs609629	0.81[ASN][1000 genomes]
rs610403	0.81[ASN][1000 genomes]
rs623949	0.81[ASN][1000 genomes]
rs625712	0.84[ASN][1000 genomes]
rs627872	0.84[ASN][1000 genomes]
rs628718	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6427147	0.91[ASN][1000 genomes]
rs6427148	0.84[ASN][1000 genomes]
rs6427149	0.83[ASN][1000 genomes]
rs6427150	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs655128	0.84[ASN][1000 genomes]
rs656919	0.84[ASN][1000 genomes]
rs6656646	0.84[ASN][1000 genomes]
rs6690929	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6697889	0.84[ASN][1000 genomes]
rs6701299	0.84[ASN][1000 genomes]
rs672950	0.84[ASN][1000 genomes]
rs686610	0.84[ASN][1000 genomes]
rs734123	0.84[ASN][1000 genomes]
rs7534485	0.84[ASN][1000 genomes]
rs760912	0.84[ASN][1000 genomes]
rs760913	0.84[ASN][1000 genomes]
rs761519	0.89[ASN][1000 genomes]
rs763433	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831836	chr1:168538779-168716956	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168701800-168720400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:168711200-168724200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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